sub-mind002, ses-01, task-auditory

Raw (original) data-quality raw run-None

Info raw run-None data-quality

	General
	Filename(s)	sub-mind002_ses-01_task-auditory_meg.fif
	MNE object type	Raw
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Duration	00:02:00 (HH:MM:SS)
	Sampling frequency	1250.00 Hz
	Time points	150,001
	Channels
	Magnetometers
	Gradiometers
	EOG
	Stimulus
	Head & sensor digitization	136 points
	Filters
	Highpass	0.10 Hz
	Lowpass	416.67 Hz
	Projections	PCA-v1 (off) PCA-v2 (off) PCA-v3 (off)

Time series raw run-None data-quality

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PSD raw run-None data-quality

Raw (filtered) filtered raw run-None

Info raw run-None filtered

	General
	Filename(s)	sub-mind002_ses-01_task-auditory_meg.fif
	MNE object type	Raw
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Duration	00:02:00 (HH:MM:SS)
	Sampling frequency	1250.00 Hz
	Time points	150,001
	Channels
	Magnetometers
	Gradiometers
	EOG
	Stimulus
	Head & sensor digitization	136 points
	Filters
	Highpass	1.00 Hz
	Lowpass	40.00 Hz
	Projections	PCA-v1 (off) PCA-v2 (off) PCA-v3 (off)

Time series raw run-None filtered

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PSD raw run-None filtered

SSP: ECG ssp ecg

Events events

Epochs: before cleaning epochs

Info epochs

	General
	MNE object type	Epochs
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Total number of events	79
	Events counts	left/noise: 10 left/tone/2500: 8 left/tone/4000: 5 left/tone/500: 11 right/noise: 12 right/tone/2500: 8 right/tone/4000: 13 right/tone/500: 12
	Time range	-0.200 – 0.500 s
	Baseline	off
	Sampling frequency	1250.00 Hz
	Time points	876
	Channels
	Magnetometers
	Gradiometers
	EOG
	Stimulus
	Head & sensor digitization	136 points
	Filters
	Highpass	1.00 Hz
	Lowpass	40.00 Hz
	Projections	PCA-v1 (off) PCA-v2 (off) PCA-v3 (off)

Metadata epochs

Epoch #	event_name	left/noise	left/tone/2500	left/tone/4000	left/tone/500	right/noise	right/tone/2500	right/tone/4000	right/tone/500
0	left/noise	0.000
1	right/noise					0.000
2	right/tone/4000							0.000
3	right/tone/500								0.000
4	right/tone/4000							0.000
5	right/tone/500								0.000
6	left/tone/500				0.000
7	right/tone/500								0.000
8	right/tone/2500						0.000
9	left/tone/2500		0.000
10	right/tone/500								0.000
11	right/noise					0.000
12	left/noise	0.000
13	left/tone/500				0.000
14	left/tone/500				0.000
15	right/noise					0.000
16	left/noise	0.000
17	right/tone/500								0.000
18	left/tone/500				0.000
19	right/tone/2500						0.000
20	right/tone/500								0.000
21	right/tone/2500						0.000
22	left/tone/2500		0.000
23	right/tone/500								0.000
24	right/noise					0.000
25	left/tone/500				0.000
26	right/tone/4000							0.000
27	left/tone/2500		0.000
28	left/tone/2500		0.000
29	left/noise	0.000
30	right/tone/500								0.000
31	left/tone/4000			0.000
32	right/tone/4000							0.000
33	right/noise					0.000
34	right/tone/4000							0.000
35	left/tone/2500		0.000
36	right/noise					0.000
37	right/tone/4000							0.000
38	left/tone/2500		0.000
39	left/tone/4000			0.000
40	left/tone/500				0.000
41	right/noise					0.000
42	left/tone/500				0.000
43	right/tone/4000							0.000
44	left/noise	0.000
45	right/tone/4000							0.000
46	left/tone/4000			0.000
47	right/tone/500								0.000
48	right/tone/500								0.000
49	left/tone/500				0.000
50	left/noise	0.000
51	right/tone/2500						0.000
52	right/tone/4000							0.000
53	left/noise	0.000
54	right/tone/4000							0.000
55	right/tone/2500						0.000
56	right/tone/500								0.000
57	right/noise					0.000
58	right/noise					0.000
59	left/noise	0.000
60	left/tone/4000			0.000
61	right/noise					0.000
62	left/tone/500				0.000
63	left/tone/500				0.000
64	right/tone/4000							0.000
65	left/tone/500				0.000
66	right/tone/2500						0.000
67	right/noise					0.000
68	right/tone/2500						0.000
69	left/tone/2500		0.000
70	left/noise	0.000
71	left/tone/2500		0.000
72	right/tone/500								0.000
73	left/tone/4000			0.000
74	right/tone/4000							0.000
75	right/noise					0.000
76	left/noise	0.000
77	right/tone/2500						0.000
78	right/tone/4000							0.000

79 rows × 10 columns

ERF image (Magnetometers) epochs

ERF image (Gradiometers) epochs

Drop log epochs

No epochs exceeded the rejection thresholds. Nothing was dropped.

PSD epochs

Raw (clean) clean raw run-None

Info raw run-None clean

	General
	Filename(s)	sub-mind002_ses-01_task-auditory_proc-filt_raw.fif
	MNE object type	Raw
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Duration	00:02:00 (HH:MM:SS)
	Sampling frequency	1250.00 Hz
	Time points	150,001
	Channels
	Magnetometers
	Gradiometers
	EOG
	Stimulus
	Head & sensor digitization	136 points
	Filters
	Highpass	1.00 Hz
	Lowpass	40.00 Hz
	Projections	PCA-v1 (off) PCA-v2 (off) PCA-v3 (off) planar-ECG--0.500-0.500)-PCA-01 (off) axial-ECG--0.500-0.500)-PCA-01 (off)

Time series raw run-None clean

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PSD raw run-None clean

Epochs: after cleaning clean epochs

Rejection thresholds epochs clean

{}

Info epochs clean

	General
	Filename(s)	sub-mind002_ses-01_task-auditory_proc-ssp_epo.fif
	MNE object type	EpochsFIF
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Total number of events	79
	Events counts	left/noise: 10 left/tone/2500: 8 left/tone/4000: 5 left/tone/500: 11 right/noise: 12 right/tone/2500: 8 right/tone/4000: 13 right/tone/500: 12
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	1250.00 Hz
	Time points	876
	Channels
	Magnetometers
	Gradiometers
	EOG
	Stimulus
	Head & sensor digitization	136 points
	Filters
	Highpass	1.00 Hz
	Lowpass	40.00 Hz
	Projections	PCA-v1 (on) PCA-v2 (on) PCA-v3 (on) planar-ECG--0.500-0.500)-PCA-01 (on) axial-ECG--0.500-0.500)-PCA-01 (on)

Metadata epochs clean

Epoch #	event_name	left/noise	left/tone/2500	left/tone/4000	left/tone/500	right/noise	right/tone/2500	right/tone/4000	right/tone/500
0	left/noise	0.000
1	right/noise					0.000
2	right/tone/4000							0.000
3	right/tone/500								0.000
4	right/tone/4000							0.000
5	right/tone/500								0.000
6	left/tone/500				0.000
7	right/tone/500								0.000
8	right/tone/2500						0.000
9	left/tone/2500		0.000
10	right/tone/500								0.000
11	right/noise					0.000
12	left/noise	0.000
13	left/tone/500				0.000
14	left/tone/500				0.000
15	right/noise					0.000
16	left/noise	0.000
17	right/tone/500								0.000
18	left/tone/500				0.000
19	right/tone/2500						0.000
20	right/tone/500								0.000
21	right/tone/2500						0.000
22	left/tone/2500		0.000
23	right/tone/500								0.000
24	right/noise					0.000
25	left/tone/500				0.000
26	right/tone/4000							0.000
27	left/tone/2500		0.000
28	left/tone/2500		0.000
29	left/noise	0.000
30	right/tone/500								0.000
31	left/tone/4000			0.000
32	right/tone/4000							0.000
33	right/noise					0.000
34	right/tone/4000							0.000
35	left/tone/2500		0.000
36	right/noise					0.000
37	right/tone/4000							0.000
38	left/tone/2500		0.000
39	left/tone/4000			0.000
40	left/tone/500				0.000
41	right/noise					0.000
42	left/tone/500				0.000
43	right/tone/4000							0.000
44	left/noise	0.000
45	right/tone/4000							0.000
46	left/tone/4000			0.000
47	right/tone/500								0.000
48	right/tone/500								0.000
49	left/tone/500				0.000
50	left/noise	0.000
51	right/tone/2500						0.000
52	right/tone/4000							0.000
53	left/noise	0.000
54	right/tone/4000							0.000
55	right/tone/2500						0.000
56	right/tone/500								0.000
57	right/noise					0.000
58	right/noise					0.000
59	left/noise	0.000
60	left/tone/4000			0.000
61	right/noise					0.000
62	left/tone/500				0.000
63	left/tone/500				0.000
64	right/tone/4000							0.000
65	left/tone/500				0.000
66	right/tone/2500						0.000
67	right/noise					0.000
68	right/tone/2500						0.000
69	left/tone/2500		0.000
70	left/noise	0.000
71	left/tone/2500		0.000
72	right/tone/500								0.000
73	left/tone/4000			0.000
74	right/tone/4000							0.000
75	right/noise					0.000
76	left/noise	0.000
77	right/tone/2500						0.000
78	right/tone/4000							0.000

79 rows × 10 columns

ERF image (Magnetometers) epochs clean

ERF image (Gradiometers) epochs clean

Drop log epochs clean

No epochs exceeded the rejection thresholds. Nothing was dropped.

PSD epochs clean

Condition: left evoked left

Info evoked left

	General
	MNE object type	EvokedArray
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Aggregation	average of 34 epochs
	Condition	0.29 × left/noise + 0.24 × left/tone/2500 + 0.15 × left/tone/4000 + 0.32 × left/tone/500
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	1250.00 Hz
	Time points	876
	Channels
	Magnetometers
	Gradiometers
	Head & sensor digitization	136 points
	Filters
	Highpass	1.00 Hz
	Lowpass	40.00 Hz
	Projections	PCA-v1 (on) PCA-v2 (on) PCA-v3 (on) planar-ECG--0.500-0.500)-PCA-01 (on) axial-ECG--0.500-0.500)-PCA-01 (on)

Time course (Magnetometers) evoked left

Time course (Gradiometers) evoked left

Topographies evoked left

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Global field power evoked left

Condition: right evoked right

Info evoked right

	General
	MNE object type	EvokedArray
	Measurement date	1912-10-26 at 16:30:04 UTC
	Participant	sub-mind002
	Experimenter	mne_anonymize
	Acquisition
	Aggregation	average of 45 epochs
	Condition	0.27 × right/noise + 0.18 × right/tone/2500 + 0.29 × right/tone/4000 + 0.27 × right/tone/500
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	1250.00 Hz
	Time points	876
	Channels
	Magnetometers
	Gradiometers
	Head & sensor digitization	136 points
	Filters
	Highpass	1.00 Hz
	Lowpass	40.00 Hz
	Projections	PCA-v1 (on) PCA-v2 (on) PCA-v3 (on) planar-ECG--0.500-0.500)-PCA-01 (on) axial-ECG--0.500-0.500)-PCA-01 (on)

Time course (Magnetometers) evoked right

Time course (Gradiometers) evoked right

Topographies evoked right

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Global field power evoked right

Noise covariance covariance evoked left right

Covariance matrix covariance

Singular values covariance

Whitening: left evoked covariance left

Whitening: right evoked covariance right

Configuration file configuration

  """MIND DATA.

M.P. Weisend, F.M. Hanlon, R. Montaño, S.P. Ahlfors, A.C. Leuthold,
D. Pantazis, J.C. Mosher, A.P. Georgopoulos, M.S. Hämäläinen, C.J.
Aine,, V. (2007).
Paving the way for cross-site pooling of magnetoencephalography (MEG) data.
International Congress Series, Volume 1300, Pages 615-618.
"""

# This has auditory, median, indx, visual, rest, and emptyroom but let's just
# process the auditory (it's the smallest after rest)
bids_root = "~/mne_data/ds004107"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds004107"
subjects = ["mind002"]
sessions = ["01"]
conditions = ["left", "right"]  # there are also tone and noise
task = "auditory"
ch_types = ["meg"]
crop_runs = (0, 120)  # to speed up computations
spatial_filter = "ssp"
l_freq = 1.0
h_freq = 40.0

System information mne-sysinfo

  Platform             Linux-5.15.0-1057-aws-x86_64-with-glibc2.35
Python               3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0]
Executable           /home/circleci/python_env/bin/python3.10
CPU                  x86_64 (36 cores)
Memory               68.6 GB

Core
├☑ mne               1.8.0.dev79+gcaba81b9f (devel, latest release is 1.7.1)
├☑ numpy             2.0.0 (OpenBLAS 0.3.27 with 2 threads)
├☑ scipy             1.13.1
└☑ matplotlib        3.9.0 (backend=agg)

Numerical (optional)
├☑ sklearn           1.5.0
├☑ numba             0.60.0
├☑ nibabel           5.2.1
├☑ pandas            2.2.2
├☑ h5io              0.2.3
├☑ h5py              3.11.0
└☐ unavailable       nilearn, dipy, openmeeg, cupy

Visualization (optional)
├☑ pyvista           0.43.10 (OpenGL 4.5 (Core Profile) Mesa 23.2.1-1ubuntu3.1~22.04.2 via llvmpipe (LLVM 15.0.7, 256 bits))
├☑ pyvistaqt         0.11.1
├☑ vtk               9.3.0
├☑ qtpy              2.4.1 (PyQt6=6.7.1)
└☐ unavailable       ipympl, pyqtgraph, mne-qt-browser, ipywidgets, trame_client, trame_server, trame_vtk, trame_vuetify

Ecosystem (optional)
├☑ mne-bids          0.16.0.dev3+g0e3cbc66a
├☑ mne-bids-pipeline 1.9.0
├☑ edfio             0.4.2
├☑ pybv              0.7.5
└☐ unavailable       mne-nirs, mne-features, mne-connectivity, mne-icalabel, neo, eeglabio, mffpy

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