"""MNE software for MEG and EEG data analysis."""
# PEP0440 compatible formatted version, see:
# https://www.python.org/dev/peps/pep-0440/
#
# Generic release markers:
# X.Y
# X.Y.Z # For bugfix releases
#
# Admissible pre-release markers:
# X.YaN # Alpha release
# X.YbN # Beta release
# X.YrcN # Release Candidate
# X.Y # Final release
#
# Dev branch marker is: 'X.Y.devN' where N is an integer.
#
try:
from importlib.metadata import version
__version__ = version("mne")
except Exception:
try:
from ._version import __version__
except ImportError:
__version__ = "0.0.0"
# have to import verbose first since it's needed by many things
from .utils import (
set_log_level,
set_log_file,
verbose,
set_config,
get_config,
get_config_path,
set_cache_dir,
set_memmap_min_size,
grand_average,
sys_info,
open_docs,
use_log_level,
)
from .io.pick import (
pick_types,
pick_channels,
pick_channels_regexp,
pick_channels_forward,
pick_types_forward,
pick_channels_cov,
pick_channels_evoked,
pick_info,
channel_type,
channel_indices_by_type,
)
from .io.base import concatenate_raws, match_channel_orders
from .io.meas_info import create_info, Info
from .io.proj import Projection
from .io.kit import read_epochs_kit
from .io.eeglab import read_epochs_eeglab
from .io.reference import (
set_eeg_reference,
set_bipolar_reference,
add_reference_channels,
)
from .io.what import what
from .bem import (
make_sphere_model,
make_bem_model,
make_bem_solution,
read_bem_surfaces,
write_bem_surfaces,
write_head_bem,
read_bem_solution,
write_bem_solution,
)
from .cov import (
read_cov,
write_cov,
Covariance,
compute_raw_covariance,
compute_covariance,
whiten_evoked,
make_ad_hoc_cov,
)
from .event import (
read_events,
write_events,
find_events,
merge_events,
pick_events,
make_fixed_length_events,
concatenate_events,
find_stim_steps,
AcqParserFIF,
count_events,
)
from ._freesurfer import (
head_to_mni,
head_to_mri,
read_talxfm,
get_volume_labels_from_aseg,
read_freesurfer_lut,
vertex_to_mni,
read_lta,
)
from .forward import (
read_forward_solution,
apply_forward,
apply_forward_raw,
average_forward_solutions,
Forward,
write_forward_solution,
make_forward_solution,
convert_forward_solution,
make_field_map,
make_forward_dipole,
use_coil_def,
)
from .source_estimate import (
read_source_estimate,
SourceEstimate,
VectorSourceEstimate,
VolSourceEstimate,
VolVectorSourceEstimate,
MixedSourceEstimate,
MixedVectorSourceEstimate,
grade_to_tris,
spatial_src_adjacency,
spatial_tris_adjacency,
spatial_dist_adjacency,
spatial_inter_hemi_adjacency,
spatio_temporal_src_adjacency,
spatio_temporal_tris_adjacency,
spatio_temporal_dist_adjacency,
extract_label_time_course,
stc_near_sensors,
)
from .surface import (
read_surface,
write_surface,
decimate_surface,
read_tri,
get_head_surf,
get_meg_helmet_surf,
dig_mri_distances,
warp_montage_volume,
get_montage_volume_labels,
)
from .morph_map import read_morph_map
from .morph import (
SourceMorph,
read_source_morph,
grade_to_vertices,
compute_source_morph,
)
from .source_space import (
read_source_spaces,
write_source_spaces,
setup_source_space,
setup_volume_source_space,
SourceSpaces,
add_source_space_distances,
morph_source_spaces,
get_volume_labels_from_src,
)
from .annotations import (
Annotations,
read_annotations,
annotations_from_events,
events_from_annotations,
)
from .epochs import (
BaseEpochs,
Epochs,
EpochsArray,
read_epochs,
concatenate_epochs,
make_fixed_length_epochs,
)
from .evoked import Evoked, EvokedArray, read_evokeds, write_evokeds, combine_evoked
from .label import (
read_label,
label_sign_flip,
write_label,
stc_to_label,
grow_labels,
Label,
split_label,
BiHemiLabel,
read_labels_from_annot,
write_labels_to_annot,
random_parcellation,
morph_labels,
labels_to_stc,
)
from .misc import parse_config, read_reject_parameters
from .coreg import (
create_default_subject,
scale_bem,
scale_mri,
scale_labels,
scale_source_space,
)
from .transforms import read_trans, write_trans, transform_surface_to, Transform
from .proj import (
read_proj,
write_proj,
compute_proj_epochs,
compute_proj_evoked,
compute_proj_raw,
sensitivity_map,
)
from .dipole import read_dipole, Dipole, DipoleFixed, fit_dipole
from .channels import (
equalize_channels,
rename_channels,
find_layout,
read_vectorview_selection,
)
from .report import Report, open_report
from .io import (
read_epochs_fieldtrip,
read_evoked_besa,
read_evoked_fieldtrip,
read_evokeds_mff,
)
from .rank import compute_rank
from . import beamformer
from . import channels
from . import chpi
from . import commands
from . import coreg
from . import cuda
from . import datasets
from . import dipole
from . import epochs
from . import event
from . import io
from . import filter
from . import gui
from . import inverse_sparse
from . import minimum_norm
from . import preprocessing
from . import simulation
from . import stats
from . import surface
from . import time_frequency
from . import viz
from . import decoding
from . import export
# initialize logging
set_log_level(None, False)
set_log_file()
"""MNE software for MEG and EEG data analysis."""
# PEP0440 compatible formatted version, see:
# https://www.python.org/dev/peps/pep-0440/
#
# Generic release markers:
# X.Y
# X.Y.Z # For bugfix releases
#
# Admissible pre-release markers:
# X.YaN # Alpha release
# X.YbN # Beta release
# X.YrcN # Release Candidate
# X.Y # Final release
#
# Dev branch marker is: 'X.Y.devN' where N is an integer.
#
try:
from importlib.metadata import version
__version__ = version("mne")
except Exception:
try:
from ._version import __version__
except ImportError:
__version__ = "0.0.0"
# have to import verbose first since it's needed by many things
from .utils import (
set_log_level,
set_log_file,
verbose,
set_config,
get_config,
get_config_path,
set_cache_dir,
set_memmap_min_size,
grand_average,
sys_info,
open_docs,
use_log_level,
)
from .io.pick import (
pick_types,
pick_channels,
pick_channels_regexp,
pick_channels_forward,
pick_types_forward,
pick_channels_cov,
pick_channels_evoked,
pick_info,
channel_type,
channel_indices_by_type,
)
from .io.base import concatenate_raws, match_channel_orders
from .io.meas_info import create_info, Info
from .io.proj import Projection
from .io.kit import read_epochs_kit
from .io.eeglab import read_epochs_eeglab
from .io.reference import (
set_eeg_reference,
set_bipolar_reference,
add_reference_channels,
)
from .io.what import what
from .bem import (
make_sphere_model,
make_bem_model,
make_bem_solution,
read_bem_surfaces,
write_bem_surfaces,
write_head_bem,
read_bem_solution,
write_bem_solution,
)
from .cov import (
read_cov,
write_cov,
Covariance,
compute_raw_covariance,
compute_covariance,
whiten_evoked,
make_ad_hoc_cov,
)
from .event import (
read_events,
write_events,
find_events,
merge_events,
pick_events,
make_fixed_length_events,
concatenate_events,
find_stim_steps,
AcqParserFIF,
count_events,
)
from ._freesurfer import (
head_to_mni,
head_to_mri,
read_talxfm,
get_volume_labels_from_aseg,
read_freesurfer_lut,
vertex_to_mni,
read_lta,
)
from .forward import (
read_forward_solution,
apply_forward,
apply_forward_raw,
average_forward_solutions,
Forward,
write_forward_solution,
make_forward_solution,
convert_forward_solution,
make_field_map,
make_forward_dipole,
use_coil_def,
)
from .source_estimate import (
read_source_estimate,
SourceEstimate,
VectorSourceEstimate,
VolSourceEstimate,
VolVectorSourceEstimate,
MixedSourceEstimate,
MixedVectorSourceEstimate,
grade_to_tris,
spatial_src_adjacency,
spatial_tris_adjacency,
spatial_dist_adjacency,
spatial_inter_hemi_adjacency,
spatio_temporal_src_adjacency,
spatio_temporal_tris_adjacency,
spatio_temporal_dist_adjacency,
extract_label_time_course,
stc_near_sensors,
)
from .surface import (
read_surface,
write_surface,
decimate_surface,
read_tri,
get_head_surf,
get_meg_helmet_surf,
dig_mri_distances,
warp_montage_volume,
get_montage_volume_labels,
)
from .morph_map import read_morph_map
from .morph import (
SourceMorph,
read_source_morph,
grade_to_vertices,
compute_source_morph,
)
from .source_space import (
read_source_spaces,
write_source_spaces,
setup_source_space,
setup_volume_source_space,
SourceSpaces,
add_source_space_distances,
morph_source_spaces,
get_volume_labels_from_src,
)
from .annotations import (
Annotations,
read_annotations,
annotations_from_events,
events_from_annotations,
)
from .epochs import (
BaseEpochs,
Epochs,
EpochsArray,
read_epochs,
concatenate_epochs,
make_fixed_length_epochs,
)
from .evoked import Evoked, EvokedArray, read_evokeds, write_evokeds, combine_evoked
from .label import (
read_label,
label_sign_flip,
write_label,
stc_to_label,
grow_labels,
Label,
split_label,
BiHemiLabel,
read_labels_from_annot,
write_labels_to_annot,
random_parcellation,
morph_labels,
labels_to_stc,
)
from .misc import parse_config, read_reject_parameters
from .coreg import (
create_default_subject,
scale_bem,
scale_mri,
scale_labels,
scale_source_space,
)
from .transforms import read_trans, write_trans, transform_surface_to, Transform
from .proj import (
read_proj,
write_proj,
compute_proj_epochs,
compute_proj_evoked,
compute_proj_raw,
sensitivity_map,
)
from .dipole import read_dipole, Dipole, DipoleFixed, fit_dipole
from .channels import (
equalize_channels,
rename_channels,
find_layout,
read_vectorview_selection,
)
from .report import Report, open_report
from .io import (
read_epochs_fieldtrip,
read_evoked_besa,
read_evoked_fieldtrip,
read_evokeds_mff,
)
from .rank import compute_rank
from . import beamformer
from . import channels
from . import chpi
from . import commands
from . import coreg
from . import cuda
from . import datasets
from . import dipole
from . import epochs
from . import event
from . import io
from . import filter
from . import gui
from . import inverse_sparse
from . import minimum_norm
from . import preprocessing
from . import simulation
from . import stats
from . import surface
from . import time_frequency
from . import viz
from . import decoding
from . import export
# initialize logging
set_log_level(None, False)
set_log_file()