General
Filename(s) sub-01_task-funloc_meg.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:02:31 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 150,001
Channels
Magnetometers and
Gradiometers and
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 330.00 Hz
Projections mag_ssp.fif : PCA-v1 (off)
mag_ssp.fif : PCA-v2 (off)
mag_ssp.fif : PCA-v3 (off)
mag_ssp.fif : PCA-v4 (off)
mag_ssp.fif : PCA-v5 (off)
mag_ssp.fif : PCA-v6 (off)
mag_ssp.fif : PCA-v7 (off)
mag_ssp.fif : PCA-v8 (off)
mag_ssp.fif : PCA-v9 (off)
grad_ssp.fif : PCA-v1 (off)
grad_ssp.fif : PCA-v2 (off)
grad_ssp.fif : PCA-v3 (off)
grad_ssp.fif : PCA-v4 (off)
grad_ssp.fif : PCA-v5 (off)
grad_ssp.fif : PCA-v6 (off)
PSD
General
Filename(s) sub-emptyroom_ses-20120911_task-noise_meg.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:51:26 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:04:23 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 263,000
Channels
Magnetometers
Gradiometers
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 330.00 Hz
Projections mag_ssp.fif : PCA-v1 (off)
mag_ssp.fif : PCA-v2 (off)
mag_ssp.fif : PCA-v3 (off)
mag_ssp.fif : PCA-v4 (off)
mag_ssp.fif : PCA-v5 (off)
mag_ssp.fif : PCA-v6 (off)
mag_ssp.fif : PCA-v7 (off)
mag_ssp.fif : PCA-v8 (off)
mag_ssp.fif : PCA-v9 (off)
grad_ssp.fif : PCA-v1 (off)
grad_ssp.fif : PCA-v2 (off)
grad_ssp.fif : PCA-v3 (off)
grad_ssp.fif : PCA-v4 (off)
grad_ssp.fif : PCA-v5 (off)
grad_ssp.fif : PCA-v6 (off)
PSD
General
Filename(s) sub-01_task-funloc_meg.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:02:31 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 150,001
Channels
Magnetometers
Gradiometers
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 330.00 Hz
PSD
General
Filename(s) sub-emptyroom_ses-20120911_task-noise_meg.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:51:26 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:04:23 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 263,000
Channels
Magnetometers
Gradiometers
Head & sensor digitization 136 points
Filters
Highpass 0.03 Hz
Lowpass 330.00 Hz
PSD
General
Filename(s) sub-01_task-funloc_proc-sss_raw.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:02:31 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 150,001
Channels
Magnetometers
Gradiometers
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
PSD
General
Filename(s) sub-01_task-noise_proc-sss_raw.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:51:26 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:04:23 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 263,000
Channels
Magnetometers
Gradiometers
Head & sensor digitization 136 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
PSD
SSP: ECG
Computed using 206 epochs (from 206 original events)
SSP: EOG
Computed using 8 epochs (from 8 original events)
Events
General
MNE object type Epochs
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Total number of events 56
Events counts auditory/standard: 24
visual/standard: 32
Time range -0.200 – 0.500 s
Baseline off
Sampling frequency 200.00 Hz
Time points 141
Metadata 56 rows × 5 columns
Channels
Magnetometers
Gradiometers
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
Projections Average EEG reference (off)
Epoch # event_name auditory/deviant auditory/standard visual/deviant visual/standard
0 visual/standard 0.000
1 visual/standard 0.000
2 visual/standard 0.000
3 auditory/standard 0.000
4 auditory/standard 0.000
5 auditory/standard 0.000
6 auditory/standard 0.000
7 visual/standard 0.000
8 visual/standard 0.000
9 auditory/standard 0.000
10 visual/standard 0.000
11 visual/standard 0.000
12 auditory/standard 0.000
13 visual/standard 0.000
14 auditory/standard 0.000
15 visual/standard 0.000
16 auditory/standard 0.000
17 auditory/standard 0.000
18 visual/standard 0.000
19 auditory/standard 0.000
20 visual/standard 0.000
21 visual/standard 0.000
22 visual/standard 0.000
23 visual/standard 0.000
24 visual/standard 0.000
25 visual/standard 0.000
26 visual/standard 0.000
27 auditory/standard 0.000
28 auditory/standard 0.000
29 auditory/standard 0.000
30 visual/standard 0.000
31 visual/standard 0.000
32 auditory/standard 0.000
33 visual/standard 0.000
34 auditory/standard 0.000
35 visual/standard 0.000
36 visual/standard 0.000
37 visual/standard 0.000
38 auditory/standard 0.000
39 auditory/standard 0.000
40 auditory/standard 0.000
41 auditory/standard 0.000
42 visual/standard 0.000
43 auditory/standard 0.000
44 visual/standard 0.000
45 visual/standard 0.000
46 visual/standard 0.000
47 auditory/standard 0.000
48 auditory/standard 0.000
49 auditory/standard 0.000
50 visual/standard 0.000
51 visual/standard 0.000
52 visual/standard 0.000
53 visual/standard 0.000
54 auditory/standard 0.000
55 visual/standard 0.000

56 rows × 6 columns

No epochs exceeded the rejection thresholds. Nothing was dropped.
PSD
PSD calculated from 43 epochs (30.1 s).
General
Filename(s) sub-01_task-funloc_proc-filt_raw.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:02:31 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 150,001
Channels
Magnetometers
Gradiometers
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
Projections meg-ECG--0.500-0.500)-PCA-01 (off)
meg-EOG--0.500-0.500)-PCA-01 (off)
eeg-EOG--0.500-0.500)-PCA-01 (off)
eeg-EOG--0.500-0.500)-PCA-02 (off)
PSD
General
Filename(s) sub-01_task-noise_proc-filt_raw.fif
MNE object type Raw
Measurement date 2012-09-11 at 22:51:26 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:04:23 (HH:MM:SS)
Sampling frequency 1000.00 Hz
Time points 263,000
Channels
Magnetometers
Gradiometers
Head & sensor digitization 136 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
Projections meg-ECG--0.500-0.500)-PCA-01 (off)
meg-EOG--0.500-0.500)-PCA-01 (off)
eeg-EOG--0.500-0.500)-PCA-01 (off)
eeg-EOG--0.500-0.500)-PCA-02 (off)
PSD
{}
General
Filename(s) sub-01_task-funloc_proc-ssp_epo.fif
MNE object type EpochsFIF
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Total number of events 56
Events counts auditory/standard: 24
visual/standard: 32
Time range -0.200 – 0.500 s
Baseline -0.200 – 0.000 s
Sampling frequency 200.00 Hz
Time points 141
Metadata 56 rows × 5 columns
Channels
Magnetometers
Gradiometers
EEG
EOG
ECG
misc
Stimulus
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
Projections Average EEG reference (on)
meg-ECG--0.500-0.500)-PCA-01 (on)
meg-EOG--0.500-0.500)-PCA-01 (on)
eeg-EOG--0.500-0.500)-PCA-01 (on)
eeg-EOG--0.500-0.500)-PCA-02 (on)
Epoch # event_name auditory/deviant auditory/standard visual/deviant visual/standard
0 visual/standard None None 0.000
1 visual/standard None None 0.000
2 visual/standard None None 0.000
3 auditory/standard None 0.000 None
4 auditory/standard None 0.000 None
5 auditory/standard None 0.000 None
6 auditory/standard None 0.000 None
7 visual/standard None None 0.000
8 visual/standard None None 0.000
9 auditory/standard None 0.000 None
10 visual/standard None None 0.000
11 visual/standard None None 0.000
12 auditory/standard None 0.000 None
13 visual/standard None None 0.000
14 auditory/standard None 0.000 None
15 visual/standard None None 0.000
16 auditory/standard None 0.000 None
17 auditory/standard None 0.000 None
18 visual/standard None None 0.000
19 auditory/standard None 0.000 None
20 visual/standard None None 0.000
21 visual/standard None None 0.000
22 visual/standard None None 0.000
23 visual/standard None None 0.000
24 visual/standard None None 0.000
25 visual/standard None None 0.000
26 visual/standard None None 0.000
27 auditory/standard None 0.000 None
28 auditory/standard None 0.000 None
29 auditory/standard None 0.000 None
30 visual/standard None None 0.000
31 visual/standard None None 0.000
32 auditory/standard None 0.000 None
33 visual/standard None None 0.000
34 auditory/standard None 0.000 None
35 visual/standard None None 0.000
36 visual/standard None None 0.000
37 visual/standard None None 0.000
38 auditory/standard None 0.000 None
39 auditory/standard None 0.000 None
40 auditory/standard None 0.000 None
41 auditory/standard None 0.000 None
42 visual/standard None None 0.000
43 auditory/standard None 0.000 None
44 visual/standard None None 0.000
45 visual/standard None None 0.000
46 visual/standard None None 0.000
47 auditory/standard None 0.000 None
48 auditory/standard None 0.000 None
49 auditory/standard None 0.000 None
50 visual/standard None None 0.000
51 visual/standard None None 0.000
52 visual/standard None None 0.000
53 visual/standard None None 0.000
54 auditory/standard None 0.000 None
55 visual/standard None None 0.000

56 rows × 6 columns

ERP image (EEG)
No epochs exceeded the rejection thresholds. Nothing was dropped.
PSD
PSD calculated from 43 epochs (30.1 s).
General
MNE object type EvokedArray
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Aggregation average of 24 epochs
Condition auditory/standard
Time range -0.200 – 0.500 s
Baseline -0.200 – 0.000 s
Sampling frequency 200.00 Hz
Time points 141
Channels
Magnetometers
Gradiometers
EEG
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
Projections Average EEG reference (on)
meg-ECG--0.500-0.500)-PCA-01 (on)
meg-EOG--0.500-0.500)-PCA-01 (on)
eeg-EOG--0.500-0.500)-PCA-01 (on)
eeg-EOG--0.500-0.500)-PCA-02 (on)
Time course (Magnetometers)
Time course (Gradiometers)
Time course (EEG)
Global field power
General
MNE object type EvokedArray
Measurement date 2012-09-11 at 22:41:49 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Aggregation average of 32 epochs
Condition visual/standard
Time range -0.200 – 0.500 s
Baseline -0.200 – 0.000 s
Sampling frequency 200.00 Hz
Time points 141
Channels
Magnetometers
Gradiometers
EEG
Head & sensor digitization 197 points
Filters
Highpass 0.03 Hz
Lowpass 50.00 Hz
Projections Average EEG reference (on)
meg-ECG--0.500-0.500)-PCA-01 (on)
meg-EOG--0.500-0.500)-PCA-01 (on)
eeg-EOG--0.500-0.500)-PCA-01 (on)
eeg-EOG--0.500-0.500)-PCA-02 (on)
Time course (Magnetometers)
Time course (Gradiometers)
Time course (EEG)
Global field power
Covariance matrix
Singular values
Whitening: auditory/standard
Whitening: visual/standard
Sensor alignment
Average distance from 88 digitized points to head: 2.84 mm
Forward
Magnetometers
Gradiometers
EEG
Source space Surface with 7300 vertices
Source orientation Free
  """Funloc data."""

from pathlib import Path

data_root = Path("~/mne_data").expanduser().resolve()
bids_root = data_root / "MNE-funloc-data"
deriv_root = data_root / "derivatives" / "mne-bids-pipeline" / "MNE-funloc-data"
subjects_dir = bids_root / "derivatives" / "freesurfer" / "subjects"
task = "funloc"
ch_types = ["meg", "eeg"]
data_type = "meg"

# filter
l_freq = None
h_freq = 50.0
# maxfilter
use_maxwell_filter: bool = True
crop_runs = (40, 190)
mf_st_duration = 60.0
# SSP
spatial_filter = "ssp"
ssp_ecg_channel = {"sub-01": "MEG0111", "sub-02": "MEG0141"}
n_proj_eog = dict(n_mag=1, n_grad=1, n_eeg=2)
n_proj_ecg = dict(n_mag=1, n_grad=1, n_eeg=0)

# Epochs
epochs_tmin = -0.2
epochs_tmax = 0.5
epochs_decim = 5  # 1000 -> 200 Hz
baseline = (None, 0)
conditions = [
    "auditory/standard",
    # "auditory/deviant",
    "visual/standard",
    # "visual/deviant",
]
decode = False
decoding_time_generalization = False

# contrasts
# contrasts = [("auditory", "visual")]

  Platform             Linux-5.15.0-1077-aws-x86_64-with-glibc2.35
Python               3.12.4 (main, Jun  8 2024, 23:40:19) [GCC 11.4.0]
Executable           /home/circleci/.pyenv/versions/3.12.4/bin/python3.12
CPU                  Intel(R) Xeon(R) Platinum 8124M CPU @ 3.00GHz (36 cores)
Memory               68.6 GiB

Core
├☑ mne               1.10.0.dev67+gbe27cf8dd (devel, latest release is 1.9.0)
├☑ numpy             2.1.3 (OpenBLAS 0.3.27 with 2 threads)
├☑ scipy             1.15.2
└☑ matplotlib        3.10.1 (backend=agg)

Numerical (optional)
├☑ sklearn           1.6.1
├☑ numba             0.61.0
├☑ nibabel           5.3.2
├☑ pandas            2.2.3
├☑ h5io              0.2.4
├☑ h5py              3.13.0
└☐ unavailable       nilearn, dipy, openmeeg, cupy

Visualization (optional)
├☑ pyvista           0.44.2 (OpenGL 4.5 (Core Profile) Mesa 23.2.1-1ubuntu3.1~22.04.3 via llvmpipe (LLVM 15.0.7, 256 bits))
├☑ pyvistaqt         0.11.2
├☑ vtk               9.3.1
├☑ qtpy              2.4.3 (PyQt6=6.8.2)
└☐ unavailable       ipympl, pyqtgraph, mne-qt-browser, ipywidgets, trame_client, trame_server, trame_vtk, trame_vuetify

Ecosystem (optional)
├☑ mne-bids          0.17.0.dev32+g3a25345
├☑ mne-bids-pipeline 1.10.0.dev68+gb995b51
├☑ edfio             0.4.6
├☑ pybv              0.7.6
└☐ unavailable       mne-nirs, mne-features, mne-connectivity, mne-icalabel, neo, eeglabio, mffpy