Bad channels marked in original data:
None
Automatically detected noisy channels:
MEG1311
MEG2523
Automatically detected flat channels:
None
| General | ||
|---|---|---|
| Filename(s) | sub-emptyroom_ses-19111211_task-noise_meg.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | sub-emptyroom | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:01:03 (HH:MM:SS) | |
| Sampling frequency | 2000.00 Hz | |
| Time points | 124,500 | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 0.03 Hz | |
| Lowpass | 650.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off) grad_ssp_upright.fif : PCA-v3 (off) grad_ssp_upright.fif : PCA-v4 (off) grad_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v1 (off) mag_ssp_upright.fif : PCA-v2 (off) mag_ssp_upright.fif : PCA-v3 (off) mag_ssp_upright.fif : PCA-v4 (off) mag_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v6 (off) mag_ssp_upright.fif : PCA-v7 (off) mag_ssp_upright.fif : PCA-v8 (off) |
|
| General | ||
|---|---|---|
| Filename(s) | sub-emptyroom_ses-19111211_task-noise_meg.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | sub-emptyroom | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:01:03 (HH:MM:SS) | |
| Sampling frequency | 2000.00 Hz | |
| Time points | 124,500 | |
| Channels | ||
| Magnetometers | and | |
| Gradiometers | and | |
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | Not available | |
| Filters | ||
| Highpass | 0.03 Hz | |
| Lowpass | 650.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off) grad_ssp_upright.fif : PCA-v3 (off) grad_ssp_upright.fif : PCA-v4 (off) grad_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v1 (off) mag_ssp_upright.fif : PCA-v2 (off) mag_ssp_upright.fif : PCA-v3 (off) mag_ssp_upright.fif : PCA-v4 (off) mag_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v6 (off) mag_ssp_upright.fif : PCA-v7 (off) mag_ssp_upright.fif : PCA-v8 (off) |
|
| General | ||
|---|---|---|
| Filename(s) | sub-01_task-noise_proc-otp_raw.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | sub-emptyroom | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:01:03 (HH:MM:SS) | |
| Sampling frequency | 250.00 Hz | |
| Time points | 15,562 | |
| Channels | ||
| Magnetometers | and | |
| Gradiometers | and | |
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | Not available | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off) grad_ssp_upright.fif : PCA-v3 (off) grad_ssp_upright.fif : PCA-v4 (off) grad_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v1 (off) mag_ssp_upright.fif : PCA-v2 (off) mag_ssp_upright.fif : PCA-v3 (off) mag_ssp_upright.fif : PCA-v4 (off) mag_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v6 (off) mag_ssp_upright.fif : PCA-v7 (off) mag_ssp_upright.fif : PCA-v8 (off) |
|
| General | ||
|---|---|---|
| MNE object type | Epochs | |
| Measurement date | 1911-12-07 at 00:00:00 UTC | |
| Participant | sub-01 | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Total number of events | 7 | |
| Events counts |
coherent/down: 3
coherent/up: 1 incoherent/down: 1 incoherent/up: 2 |
|
| Time range | -0.200 – 1.000 s | |
| Baseline | off | |
| Sampling frequency | 250.00 Hz | |
| Time points | 301 | |
| Metadata | 7 rows × 5 columns | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off) grad_ssp_upright.fif : PCA-v3 (off) grad_ssp_upright.fif : PCA-v4 (off) grad_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v1 (off) mag_ssp_upright.fif : PCA-v2 (off) mag_ssp_upright.fif : PCA-v3 (off) mag_ssp_upright.fif : PCA-v4 (off) mag_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v6 (off) mag_ssp_upright.fif : PCA-v7 (off) mag_ssp_upright.fif : PCA-v8 (off) |
|
| Epoch # | event_name | coherent/down | coherent/up | incoherent/down | incoherent/up | |
|---|---|---|---|---|---|---|
| 0 | incoherent/up | 0.000 | ||||
| 1 | incoherent/up | 0.000 | ||||
| 2 | incoherent/down | 0.000 | ||||
| 3 | coherent/down | 0.000 | ||||
| 4 | coherent/down | 0.000 | ||||
| 5 | coherent/up | 0.000 | ||||
| 6 | coherent/down | 0.000 |
7 rows × 6 columns
No epochs exceeded the rejection thresholds. Nothing was dropped.
{}
| General | ||
|---|---|---|
| Filename(s) | sub-01_task-localizer_epo.fif | |
| MNE object type | EpochsFIF | |
| Measurement date | 1911-12-07 at 00:00:00 UTC | |
| Participant | sub-01 | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Total number of events | 7 | |
| Events counts |
coherent/down: 3
coherent/up: 1 incoherent/down: 1 incoherent/up: 2 |
|
| Time range | -0.200 – 1.000 s | |
| Baseline | -0.200 – 0.000 s | |
| Sampling frequency | 250.00 Hz | |
| Time points | 301 | |
| Metadata | 7 rows × 5 columns | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (on)
grad_ssp_upright.fif : PCA-v2 (on) grad_ssp_upright.fif : PCA-v3 (on) grad_ssp_upright.fif : PCA-v4 (on) grad_ssp_upright.fif : PCA-v5 (on) mag_ssp_upright.fif : PCA-v1 (on) mag_ssp_upright.fif : PCA-v2 (on) mag_ssp_upright.fif : PCA-v3 (on) mag_ssp_upright.fif : PCA-v4 (on) mag_ssp_upright.fif : PCA-v5 (on) mag_ssp_upright.fif : PCA-v6 (on) mag_ssp_upright.fif : PCA-v7 (on) mag_ssp_upright.fif : PCA-v8 (on) |
|
| Epoch # | event_name | coherent/down | coherent/up | incoherent/down | incoherent/up | |
|---|---|---|---|---|---|---|
| 0 | incoherent/up | 0.000 | ||||
| 1 | incoherent/up | 0.000 | ||||
| 2 | incoherent/down | 0.000 | ||||
| 3 | coherent/down | 0.000 | ||||
| 4 | coherent/down | 0.000 | ||||
| 5 | coherent/up | 0.000 | ||||
| 6 | coherent/down | 0.000 |
7 rows × 6 columns
No epochs exceeded the rejection thresholds. Nothing was dropped.
"""ds003392: hMT+ Localizer (with OTP).
See [OpenNeuro](https://openneuro.org/datasets/ds003392) for more information.
This config tests implementation of oversampled temporal projection, skipping maxwell
filtering, followed by frequency filtering and subsequent preprocessing steps.
"""
bids_root = "~/mne_data/ds003392"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds003392_otp_ff"
ignore_warnings = [
"Internal Active Shielding data", # until MNE-BIDS releases a fix for ERM finding
]
subjects = ["01"]
task = "localizer"
# use oversampled temporal projection to clean sensor noise
use_otp_denoising = True
otp_duration = 10.0
# for OTP testing purposes, set bad channel detection to True
find_flat_channels_meg = True
find_noisy_channels_meg = True
# Don't use maxwell filtering so we can test appropriate deriv passing from OTP to
# frequency filter
use_maxwell_filter = False
ch_types = ["meg"]
# Still pass Maxwell option for denoising step
mf_extra_kws = {"bad_condition": "warning"}
mf_cal_missing = "warn"
mf_ctc_missing = "warn"
l_freq = 1.0
h_freq = 40.0
raw_resample_sfreq = 250
crop_runs = (0, 20)
# Epochs
epochs_tmin = -0.2
epochs_tmax = 1.0
baseline = (None, 0)
# Conditions / events to consider when epoching
conditions = ["coherent", "incoherent"]
Platform Linux-7.0.0-1004-aws-x86_64-with-glibc2.43 (X11)
Python 3.14.4 (main, May 12 2026, 13:57:53) [GCC 15.2.0]
Executable /home/circleci/python_env/bin/python3
CPU AMD EPYC 9R45 (2 cores)
Memory 7.6 GiB
Core
├☑ mne 1.14.0.dev112+g8f498626a (development, latest release is 1.13.2)
├☑ numpy 2.5.4 (OpenBLAS 0.3.31.dev with 2 threads via pthreads)
├☑ scipy 1.18.1
└☑ matplotlib 3.11.2 (backend=agg)
Numerical (optional)
├☑ scikit-learn 1.9.1
├☑ threadpoolctl 3.7.0
├☑ numba 0.68.0
├☑ nibabel 5.4.2
├☑ pandas 3.0.6
├☑ h5io 0.2.5
├☑ h5py 3.16.0
└☐ unavailable nilearn, dipy, openmeeg, python-picard, jamica, cupy
Visualization (optional)
├☑ pyvista 0.49.1 (OpenGL 4.5 (Core Profile) Mesa 26.0.8-1ubuntu0.3 via llvmpipe (LLVM 21.1.8, 256 bits))
├☑ pyvistaqt 0.13.1
├☑ vtk 9.7.1
├☑ qtpy 2.4.3 (PySide6=6.12.0)
└☐ unavailable ipympl, pyqtgraph, mne-qt-browser, ipywidgets, trame, trame_client, trame_server, trame_pyvista, trame_vtk, trame_vuetify
Ecosystem (optional)
├☑ mne-bids 0.21.0.dev10+ga582be8f8
├☑ mne-icalabel 0.10.0
├☑ mne-bids-pipeline 1.11.0.dev86+ge2a34cf44
├☑ autoreject 0.6.0.dev2+g2f72b264
├☑ eeglabio 0.1.4
├☑ edfio 0.4.18
├☑ curryreader 0.1.2
├☑ mffpy 0.11.0
├☑ pybv 0.8.1
├☑ defusedxml 0.7.1
└☐ unavailable mne-nirs, mne-features, mne-connectivity, neo, pymef, antio