Bad channels marked in original data:
None
Automatically detected noisy channels:
MEG1311
MEG2523
Automatically detected flat channels:
None
| General | ||
|---|---|---|
| Filename(s) | sub-emptyroom_ses-19111211_task-noise_meg.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | sub-emptyroom | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:01:03 (HH:MM:SS) | |
| Sampling frequency | 2000.00 Hz | |
| Time points | 124,500 | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 0.03 Hz | |
| Lowpass | 650.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off) grad_ssp_upright.fif : PCA-v3 (off) grad_ssp_upright.fif : PCA-v4 (off) grad_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v1 (off) mag_ssp_upright.fif : PCA-v2 (off) mag_ssp_upright.fif : PCA-v3 (off) mag_ssp_upright.fif : PCA-v4 (off) mag_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v6 (off) mag_ssp_upright.fif : PCA-v7 (off) mag_ssp_upright.fif : PCA-v8 (off) |
|
| General | ||
|---|---|---|
| Filename(s) | sub-emptyroom_ses-19111211_task-noise_meg.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | sub-emptyroom | |
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:01:03 (HH:MM:SS) | |
| Sampling frequency | 2000.00 Hz | |
| Time points | 124,500 | |
| Channels | ||
| Magnetometers | and | |
| Gradiometers | and | |
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | Not available | |
| Filters | ||
| Highpass | 0.03 Hz | |
| Lowpass | 650.00 Hz | |
| Projections |
grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off) grad_ssp_upright.fif : PCA-v3 (off) grad_ssp_upright.fif : PCA-v4 (off) grad_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v1 (off) mag_ssp_upright.fif : PCA-v2 (off) mag_ssp_upright.fif : PCA-v3 (off) mag_ssp_upright.fif : PCA-v4 (off) mag_ssp_upright.fif : PCA-v5 (off) mag_ssp_upright.fif : PCA-v6 (off) mag_ssp_upright.fif : PCA-v7 (off) mag_ssp_upright.fif : PCA-v8 (off) |
|
| General | ||
|---|---|---|
| Filename(s) | sub-01_task-noise_proc-otp_raw.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | ||
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:00:21 (HH:MM:SS) | |
| Sampling frequency | 2000.00 Hz | |
| Time points | 40,001 | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 0.03 Hz | |
| Lowpass | 650.00 Hz | |
| General | ||
|---|---|---|
| Filename(s) | sub-01_task-noise_proc-sss_raw.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | ||
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:00:20 (HH:MM:SS) | |
| Sampling frequency | 250.00 Hz | |
| Time points | 5,000 | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| General | ||
|---|---|---|
| MNE object type | Epochs | |
| Measurement date | 1911-12-07 at 00:00:00 UTC | |
| Participant | ||
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Total number of events | 7 | |
| Events counts |
coherent/down: 3
coherent/up: 1 incoherent/down: 1 incoherent/up: 2 |
|
| Time range | -0.200 – 1.000 s | |
| Baseline | off | |
| Sampling frequency | 250.00 Hz | |
| Time points | 301 | |
| Metadata | 7 rows × 5 columns | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| Epoch # | event_name | coherent/down | coherent/up | incoherent/down | incoherent/up | |
|---|---|---|---|---|---|---|
| 0 | incoherent/up | 0.000 | ||||
| 1 | incoherent/up | 0.000 | ||||
| 2 | incoherent/down | 0.000 | ||||
| 3 | coherent/down | 0.000 | ||||
| 4 | coherent/down | 0.000 | ||||
| 5 | coherent/up | 0.000 | ||||
| 6 | coherent/down | 0.000 |
7 rows × 6 columns
No epochs exceeded the rejection thresholds. Nothing was dropped.
| Method | picard |
|---|---|
| Fit parameters | ortho=False extended=True max_iter=1000 |
| Fit | 257 iterations on epochs (2107 samples) |
| ICA components | 37 |
| Available PCA components | 306 |
| Channel types | mag, grad |
| ICA components marked for exclusion | ICA000 ICA001 ICA002 ICA003 ICA004 ICA005 ICA006 ICA007 ICA008 ICA009 ICA010 ICA011 ICA012 ICA013 ICA014 ICA015 ICA016 ICA017 ICA018 ICA019 ICA020 ICA021 ICA022 ICA023 ICA024 ICA025 ICA026 ICA027 ICA028 ICA029 ICA030 ICA031 ICA032 ICA033 ICA034 ICA035 ICA036 |
| General | ||
|---|---|---|
| MNE object type | Epochs | |
| Measurement date | 1911-12-07 at 00:00:00 UTC | |
| Participant | ||
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Total number of events | 7 | |
| Events counts |
coherent/down: 3
coherent/up: 1 incoherent/down: 1 incoherent/up: 2 |
|
| Time range | -0.200 – 1.000 s | |
| Baseline | off | |
| Sampling frequency | 250.00 Hz | |
| Time points | 301 | |
| Metadata | 7 rows × 5 columns | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| Epoch # | event_name | coherent/down | coherent/up | incoherent/down | incoherent/up | |
|---|---|---|---|---|---|---|
| 0 | incoherent/up | 0.000 | ||||
| 1 | incoherent/up | 0.000 | ||||
| 2 | incoherent/down | 0.000 | ||||
| 3 | coherent/down | 0.000 | ||||
| 4 | coherent/down | 0.000 | ||||
| 5 | coherent/up | 0.000 | ||||
| 6 | coherent/down | 0.000 |
7 rows × 6 columns
No epochs exceeded the rejection thresholds. Nothing was dropped.
| Method | picard |
|---|---|
| Fit parameters | ortho=False extended=True max_iter=1000 |
| Fit | 257 iterations on epochs (2107 samples) |
| ICA components | 37 |
| Available PCA components | 306 |
| Channel types | mag, grad |
| ICA components marked for exclusion | ICA000 ICA001 ICA002 ICA003 ICA004 ICA005 ICA006 ICA007 ICA008 ICA009 ICA010 ICA011 ICA012 ICA013 ICA014 ICA015 ICA016 ICA017 ICA018 ICA019 ICA020 ICA021 ICA022 ICA023 ICA024 ICA025 ICA026 ICA027 ICA028 ICA029 ICA030 ICA031 ICA032 ICA033 ICA034 ICA035 ICA036 |
| General | ||
|---|---|---|
| Filename(s) | sub-01_task-noise_proc-filt_raw.fif | |
| MNE object type | Raw | |
| Measurement date | 1911-12-11 at 00:00:00 UTC | |
| Participant | ||
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Duration | 00:00:20 (HH:MM:SS) | |
| Sampling frequency | 250.00 Hz | |
| Time points | 5,000 | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
{}
| General | ||
|---|---|---|
| Filename(s) | sub-01_task-localizer_proc-ica_epo.fif | |
| MNE object type | EpochsFIF | |
| Measurement date | 1911-12-07 at 00:00:00 UTC | |
| Participant | ||
| Experimenter | mne_anonymize | |
| Acquisition | ||
| Total number of events | 7 | |
| Events counts |
coherent/down: 3
coherent/up: 1 incoherent/down: 1 incoherent/up: 2 |
|
| Time range | -0.200 – 1.000 s | |
| Baseline | -0.200 – 0.000 s | |
| Sampling frequency | 250.00 Hz | |
| Time points | 301 | |
| Metadata | 7 rows × 5 columns | |
| Channels | ||
| Magnetometers | ||
| Gradiometers | ||
| EOG | ||
| ECG | ||
| misc | ||
| Stimulus | ||
| Head & sensor digitization | 38 points | |
| Filters | ||
| Highpass | 1.00 Hz | |
| Lowpass | 40.00 Hz | |
| Epoch # | event_name | coherent/down | coherent/up | incoherent/down | incoherent/up | |
|---|---|---|---|---|---|---|
| 0 | incoherent/up | 0.000 | ||||
| 1 | incoherent/up | 0.000 | ||||
| 2 | incoherent/down | 0.000 | ||||
| 3 | coherent/down | 0.000 | ||||
| 4 | coherent/down | 0.000 | ||||
| 5 | coherent/up | 0.000 | ||||
| 6 | coherent/down | 0.000 |
7 rows × 6 columns
No epochs exceeded the rejection thresholds. Nothing was dropped.
"""ds003392: hMT+ Localizer (OTP + Maxwell filter).
See [OpenNeuro](https://openneuro.org/datasets/ds003392) for more information.
This config tests implementation of oversampled temporal projection followed by maxwell
filtering and subsequent preprocessing steps.
"""
from mne.transforms import translation
bids_root = "~/mne_data/ds003392"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds003392_otp_mxw"
ignore_warnings = [
"Internal Active Shielding data", # until MNE-BIDS releases a fix for ERM finding
]
subjects = ["01"]
task = "localizer"
# use oversampled temporal projection to clean sensor noise
use_otp_denoising = True
otp_duration = 10.0
# for OTP testing purposes, set to True
find_flat_channels_meg = True
find_noisy_channels_meg = True
use_maxwell_filter = True
mf_extra_kws = {"bad_condition": "warning"}
ch_types = ["meg"]
mf_esss = 1
# translation args should be x, y, z as scalar (int or float)
mf_destination = translation(z=0.04)
mf_cal_missing = "warn"
mf_ctc_missing = "warn"
l_freq = 1.0
h_freq = 40.0
raw_resample_sfreq = 250
crop_runs = (0, 20)
# Artifact correction
spatial_filter = "ica"
process_raw_clean = False
ica_algorithm = "picard-extended_infomax"
ica_max_iterations = 1000
ica_l_freq = 1.0
ica_n_components = 0.99
# Epochs
epochs_tmin = -0.2
epochs_tmax = 1.0
baseline = (None, 0)
# Conditions / events to consider when epoching
conditions = ["coherent", "incoherent"]
Platform Linux-7.0.0-1004-aws-x86_64-with-glibc2.43 (X11)
Python 3.14.4 (main, May 12 2026, 13:57:53) [GCC 15.2.0]
Executable /home/circleci/python_env/bin/python3
CPU AMD EPYC 9R45 (2 cores)
Memory 7.6 GiB
Core
├☑ mne 1.14.0.dev112+g8f498626a (development, latest release is 1.13.2)
├☑ numpy 2.5.4 (OpenBLAS 0.3.34.106.0 with 2 threads via pthreads)
├☑ scipy 1.18.1
└☑ matplotlib 3.11.2 (backend=agg)
Numerical (optional)
├☑ scikit-learn 1.9.1
├☑ threadpoolctl 3.7.0
├☑ numba 0.68.0
├☑ nibabel 5.4.2
├☑ pandas 3.0.6
├☑ h5io 0.2.5
├☑ h5py 3.16.0
└☐ unavailable nilearn, dipy, openmeeg, python-picard, jamica, cupy
Visualization (optional)
├☑ pyvista 0.49.1 (OpenGL 4.5 (Core Profile) Mesa 26.0.8-1ubuntu0.3 via llvmpipe (LLVM 21.1.8, 256 bits))
├☑ pyvistaqt 0.13.1
├☑ vtk 9.7.1
├☑ qtpy 2.4.3 (PySide6=6.12.0)
└☐ unavailable ipympl, pyqtgraph, mne-qt-browser, ipywidgets, trame, trame_client, trame_server, trame_pyvista, trame_vtk, trame_vuetify
Ecosystem (optional)
├☑ mne-bids 0.21.0.dev10+ga582be8f8
├☑ mne-icalabel 0.10.0
├☑ mne-bids-pipeline 1.11.0.dev86+ge2a34cf44
├☑ autoreject 0.6.0.dev2+g2f72b264
├☑ eeglabio 0.1.4
├☑ edfio 0.4.18
├☑ curryreader 0.1.2
├☑ mffpy 0.11.0
├☑ pybv 0.8.1
├☑ defusedxml 0.7.1
└☐ unavailable mne-nirs, mne-features, mne-connectivity, neo, pymef, antio