sub-0001, task-AEF

Raw (original), run 01 data-quality raw run-01

Info raw run-01 data-quality

	General
	Filename(s)	sub-0001_task-AEF_run-01_meg.meg4
	MNE object type	RawCTF
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Duration	00:02:00 (HH:MM:SS)
	Sampling frequency	2400.00 Hz
	Time points	288,001
	Channels
	Magnetometers
	EEG
	EOG
	ECG
	misc
	Reference Magnetometers
	Stimulus
	Head & sensor digitization	8 points
	Filters
	Highpass	0.00 Hz
	Lowpass	1200.00 Hz

Time series raw run-01 data-quality

Move the slider or click on the image and use the ← and → keys to browse.

Raw (filtered), run 01 filtered raw run-01

Info raw run-01 filtered

	General
	Filename(s)	sub-0001_task-AEF_run-01_meg.meg4
	MNE object type	RawCTF
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Duration	00:02:00 (HH:MM:SS)
	Sampling frequency	2400.00 Hz
	Time points	288,001
	Channels
	Magnetometers
	EEG
	EOG
	ECG
	misc
	Reference Magnetometers
	Stimulus
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Time series raw run-01 filtered

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Events events

Epochs: before cleaning epochs

Info epochs

	General
	MNE object type	Epochs
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Total number of events	107
	Events counts	button: 16 deviant: 15 standard: 76
	Time range	-0.200 – 0.500 s
	Baseline	off
	Sampling frequency	600.00 Hz
	Time points	421
	Channels
	Magnetometers
	EEG
	EOG
	ECG
	misc
	Reference Magnetometers
	Stimulus
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Metadata epochs

Epoch #	event_name	button	deviant	standard
0	button	0.000		0.044
1	standard			0.000
2	standard			0.000
3	standard			0.000
4	standard			0.000
5	standard			0.000
6	standard			0.000
7	standard			0.000
8	standard			0.000
9	standard			0.000
10	standard			0.000
11	deviant	0.402	0.000
12	button	0.000	-0.402
13	button	-0.018	-0.420
14	standard			0.000
15	deviant		0.000
16	standard			0.000
17	standard			0.000
18	standard			0.000
19	standard			0.000
20	deviant	0.363	0.000
21	button	0.000	-0.363
22	standard			0.000
23	standard			0.000
24	deviant		0.000
25	button	0.000	-0.510
26	standard			0.000
27	standard			0.000
28	standard			0.000
29	standard			0.000
30	standard			0.000
31	standard			0.000
32	standard			0.000
33	standard			0.000
34	standard			0.000
35	standard			0.000
36	standard			0.000
37	deviant	0.450	0.000
38	button	0.000	-0.450
39	standard			0.000
40	standard			0.000
41	standard			0.000
42	standard			0.000
43	standard			0.000
44	deviant	0.403	0.000
45	button	0.000	-0.403
46	standard			0.000
47	standard			0.000
48	standard			0.000
49	standard			0.000
50	standard			0.000
51	deviant	0.449	0.000
52	button	0.000	-0.449	0.484
53	standard			0.000
54	standard			0.000
55	deviant		0.000
56	button	0.000	-0.640
57	standard			0.000
58	standard			0.000
59	standard			0.000
60	standard			0.000
61	standard			0.000
62	standard			0.000
63	standard			0.000
64	standard			0.000
65	standard			0.000
66	standard			0.000
67	deviant	0.490	0.000
68	deviant	0.489	0.000
69	button	0.000	-0.489
70	standard			0.000
71	standard			0.000
72	standard			0.000
73	standard			0.000
74	deviant		0.000
75	button	0.000	-0.527
76	standard			0.000
77	standard			0.000
78	standard			0.000
79	deviant	0.432	0.000
80	button	0.000	-0.432	0.385
81	button	-0.036	-0.469	0.348
82	standard			0.000
83	standard			0.000
84	standard			0.000
85	deviant		0.000
86	button	0.000	-0.522
87	standard			0.000
88	standard			0.000
89	standard			0.000
90	standard			0.000
91	standard			0.000
92	standard			0.000
93	standard			0.000
94	standard			0.000
95	deviant		0.000
96	button	0.000	-0.546
97	standard			0.000
98	standard			0.000
99	standard			0.000
100	standard			0.000
101	deviant	0.449	0.000
102	button	0.000	-0.449
103	standard			0.000
104	standard			0.000
105	standard			0.000
106	standard			0.000

107 rows × 5 columns

ERF image (Magnetometers) epochs

ERP image (EEG) epochs

Drop log epochs

No epochs exceeded the rejection thresholds. Nothing was dropped.

PSD epochs

Epochs: after cleaning clean epochs

Rejection thresholds epochs clean

{'mag': 4e-12, 'eog': 0.00025}

Info epochs clean

	General
	Filename(s)	sub-0001_task-AEF_epo.fif
	MNE object type	EpochsFIF
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Total number of events	101
	Events counts	button: 15 deviant: 15 standard: 71
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	600.00 Hz
	Time points	421
	Channels
	Magnetometers
	EEG
	EOG
	ECG
	misc
	Reference Magnetometers
	Stimulus
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Metadata epochs clean

Epoch #	event_name	button	deviant	standard
0	button	0.000		0.044
1	standard			0.000
2	standard			0.000
3	standard			0.000
4	standard			0.000
5	standard			0.000
6	standard			0.000
7	standard			0.000
8	standard			0.000
9	standard			0.000
10	standard			0.000
11	deviant	0.402	0.000
12	button	0.000	-0.402
13	button	-0.018	-0.420
15	deviant		0.000
16	standard			0.000
17	standard			0.000
18	standard			0.000
19	standard			0.000
20	deviant	0.363	0.000
21	button	0.000	-0.363
22	standard			0.000
23	standard			0.000
24	deviant		0.000
25	button	0.000	-0.510
26	standard			0.000
27	standard			0.000
28	standard			0.000
29	standard			0.000
30	standard			0.000
31	standard			0.000
32	standard			0.000
33	standard			0.000
34	standard			0.000
35	standard			0.000
36	standard			0.000
37	deviant	0.450	0.000
38	button	0.000	-0.450
39	standard			0.000
40	standard			0.000
41	standard			0.000
42	standard			0.000
43	standard			0.000
44	deviant	0.403	0.000
45	button	0.000	-0.403
46	standard			0.000
47	standard			0.000
48	standard			0.000
49	standard			0.000
50	standard			0.000
51	deviant	0.449	0.000
52	button	0.000	-0.449	0.484
53	standard			0.000
54	standard			0.000
55	deviant		0.000
56	button	0.000	-0.640
57	standard			0.000
59	standard			0.000
60	standard			0.000
61	standard			0.000
62	standard			0.000
63	standard			0.000
64	standard			0.000
65	standard			0.000
66	standard			0.000
67	deviant	0.490	0.000
68	deviant	0.489	0.000
69	button	0.000	-0.489
70	standard			0.000
72	standard			0.000
73	standard			0.000
74	deviant		0.000
75	button	0.000	-0.527
76	standard			0.000
77	standard			0.000
78	standard			0.000
79	deviant	0.432	0.000
80	button	0.000	-0.432	0.385
83	standard			0.000
84	standard			0.000
85	deviant		0.000
86	button	0.000	-0.522
87	standard			0.000
88	standard			0.000
89	standard			0.000
90	standard			0.000
91	standard			0.000
92	standard			0.000
93	standard			0.000
94	standard			0.000
95	deviant		0.000
96	button	0.000	-0.546
98	standard			0.000
99	standard			0.000
100	standard			0.000
101	deviant	0.449	0.000
102	button	0.000	-0.449
103	standard			0.000
104	standard			0.000
105	standard			0.000
106	standard			0.000

101 rows × 5 columns

ERF image (Magnetometers) epochs clean

ERP image (EEG) epochs clean

Drop log epochs clean

PSD epochs clean

Condition: standard evoked standard

Info evoked standard

	General
	MNE object type	EvokedArray
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Aggregation	average of 71 epochs
	Condition	standard
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	600.00 Hz
	Time points	421
	Channels
	Magnetometers
	Reference Magnetometers
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Time course (Magnetometers) evoked standard

Topographies evoked standard

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Global field power evoked standard

Condition: deviant deviant evoked

Info evoked deviant

	General
	MNE object type	EvokedArray
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Aggregation	average of 15 epochs
	Condition	deviant
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	600.00 Hz
	Time points	421
	Channels
	Magnetometers
	Reference Magnetometers
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Time course (Magnetometers) evoked deviant

Topographies evoked deviant

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Global field power evoked deviant

Condition: button button evoked

Info evoked button

	General
	MNE object type	EvokedArray
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Aggregation	average of 15 epochs
	Condition	button
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	600.00 Hz
	Time points	421
	Channels
	Magnetometers
	Reference Magnetometers
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Time course (Magnetometers) evoked button

Topographies evoked button

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Global field power evoked button

Contrast: deviant+standard contrast deviant+standard evoked

Info evoked deviant+standard contrast

	General
	MNE object type	EvokedArray
	Measurement date	1925-01-01 at 09:43:00 UTC
	Participant	sub-0001
	Experimenter	EAB
	Acquisition
	Aggregation	average of 12 epochs
	Condition	deviant - standard
	Time range	-0.200 – 0.500 s
	Baseline	-0.200 – 0.000 s
	Sampling frequency	600.00 Hz
	Time points	421
	Channels
	Magnetometers
	Reference Magnetometers
	Head & sensor digitization	8 points
	Filters
	Highpass	0.30 Hz
	Lowpass	100.00 Hz

Time course (Magnetometers) evoked deviant+standard contrast

Topographies evoked deviant+standard contrast

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Global field power evoked deviant+standard contrast

Decoding: full-epochs contrast decoding deviant–standard epochs

Full-epochs decoding epochs contrast decoding deviant–standard

Decoding: time-by-time contrast decoding deviant–standard epochs

Decoding over time: deviant vs. standard epochs contrast decoding deviant–standard

Time generalization: deviant vs. standard epochs contrast decoding deviant–standard

Noise covariance button contrast covariance deviant deviant+standard evoked standard

Covariance matrix covariance

Singular values covariance

Whitening: standard evoked covariance standard

Whitening: deviant evoked covariance deviant

Whitening: button evoked covariance button

Whitening: deviant+standard evoked covariance deviant+standard contrast

Configuration file configuration

  """Brainstorm - Auditory Dataset.

See https://openneuro.org/datasets/ds000246/versions/1.0.0 for more
information.
"""

bids_root = "~/mne_data/ds000246"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds000246"

runs = ["01"]
crop_runs = (0, 120)  # Reduce memory usage on CI system
read_raw_bids_verbose = "error"  # No BIDS -> MNE mapping found for channel ...
l_freq = 0.3
h_freq = 100
epochs_decim = 4
subjects = ["0001"]
ch_types = ["meg"]
reject = dict(mag=4e-12, eog=250e-6)
conditions = ["standard", "deviant", "button"]
epochs_metadata_tmin = ["standard", "deviant"]  # for testing only
contrasts = [("deviant", "standard")]
decode = True
decoding_time_generalization = True
decoding_time_generalization_decim = 4
on_error = "abort"
plot_psd_for_runs = []  # too much memory on CIs

parallel_backend = "dask"
dask_worker_memory_limit = "2G"
dask_temp_dir = "./.dask-worker-space"
dask_open_dashboard = True
n_jobs = 2

System information mne-sysinfo

  Platform             Linux-5.15.0-1057-aws-x86_64-with-glibc2.35
Python               3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0]
Executable           /home/circleci/python_env/bin/python3.10
CPU                  x86_64 (36 cores)
Memory               69.1 GB

Core
├☑ mne               1.8.0.dev79+gcaba81b9f (devel, latest release is 1.7.1)
├☑ numpy             2.0.0 (OpenBLAS 0.3.27 with 2 threads)
├☑ scipy             1.13.1
└☑ matplotlib        3.9.0 (backend=agg)

Numerical (optional)
├☑ sklearn           1.5.0
├☑ numba             0.60.0
├☑ nibabel           5.2.1
├☑ pandas            2.2.2
├☑ h5io              0.2.3
├☑ h5py              3.11.0
└☐ unavailable       nilearn, dipy, openmeeg, cupy

Visualization (optional)
├☑ pyvista           0.43.10 (OpenGL 4.5 (Core Profile) Mesa 23.2.1-1ubuntu3.1~22.04.2 via llvmpipe (LLVM 15.0.7, 256 bits))
├☑ pyvistaqt         0.11.1
├☑ vtk               9.3.0
├☑ qtpy              2.4.1 (PyQt6=6.7.1)
└☐ unavailable       ipympl, pyqtgraph, mne-qt-browser, ipywidgets, trame_client, trame_server, trame_vtk, trame_vuetify

Ecosystem (optional)
├☑ mne-bids          0.16.0.dev3+g0e3cbc66a
├☑ mne-bids-pipeline 1.9.0
├☑ eeglabio          0.0.2-4
├☑ edfio             0.4.2
├☑ pybv              0.7.5
└☐ unavailable       mne-nirs, mne-features, mne-connectivity, mne-icalabel, neo, mffpy

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