General
Filename(s) sub-01_task-localizer_meg.fif
MNE object type Raw
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:03:00 (HH:MM:SS)
Sampling frequency 2000.00 Hz
Time points 360,001
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 0.03 Hz
Lowpass 650.00 Hz
Projections grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off)
grad_ssp_upright.fif : PCA-v3 (off)
grad_ssp_upright.fif : PCA-v4 (off)
grad_ssp_upright.fif : PCA-v5 (off)
mag_ssp_upright.fif : PCA-v1 (off)
mag_ssp_upright.fif : PCA-v2 (off)
mag_ssp_upright.fif : PCA-v3 (off)
mag_ssp_upright.fif : PCA-v4 (off)
mag_ssp_upright.fif : PCA-v5 (off)
mag_ssp_upright.fif : PCA-v6 (off)
mag_ssp_upright.fif : PCA-v7 (off)
mag_ssp_upright.fif : PCA-v8 (off)
PSD
General
Filename(s) sub-emptyroom_ses-19111211_task-noise_meg.fif
MNE object type Raw
Measurement date 1911-12-11 at 00:00:00 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:01:03 (HH:MM:SS)
Sampling frequency 2000.00 Hz
Time points 124,500
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization Not available
Filters
Highpass 0.03 Hz
Lowpass 650.00 Hz
Projections grad_ssp_upright.fif : PCA-v1 (off)
grad_ssp_upright.fif : PCA-v2 (off)
grad_ssp_upright.fif : PCA-v3 (off)
grad_ssp_upright.fif : PCA-v4 (off)
grad_ssp_upright.fif : PCA-v5 (off)
mag_ssp_upright.fif : PCA-v1 (off)
mag_ssp_upright.fif : PCA-v2 (off)
mag_ssp_upright.fif : PCA-v3 (off)
mag_ssp_upright.fif : PCA-v4 (off)
mag_ssp_upright.fif : PCA-v5 (off)
mag_ssp_upright.fif : PCA-v6 (off)
mag_ssp_upright.fif : PCA-v7 (off)
mag_ssp_upright.fif : PCA-v8 (off)
PSD
General
Filename(s) sub-01_task-localizer_meg.fif
MNE object type Raw
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:03:00 (HH:MM:SS)
Sampling frequency 2000.00 Hz
Time points 360,001
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 0.03 Hz
Lowpass 650.00 Hz
PSD
General
Filename(s) sub-emptyroom_ses-19111211_task-noise_meg.fif
MNE object type Raw
Measurement date 1911-12-11 at 00:00:00 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:01:03 (HH:MM:SS)
Sampling frequency 2000.00 Hz
Time points 124,500
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 0.03 Hz
Lowpass 650.00 Hz
PSD
General
Filename(s) sub-01_task-localizer_proc-sss_raw.fif
MNE object type Raw
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:02:60 (HH:MM:SS)
Sampling frequency 250.00 Hz
Time points 45,000
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
PSD
General
Filename(s) sub-01_task-noise_proc-sss_raw.fif
MNE object type Raw
Measurement date 1911-12-11 at 00:00:00 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:01:03 (HH:MM:SS)
Sampling frequency 250.00 Hz
Time points 15,562
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
PSD
General
MNE object type Epochs
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Total number of events 78
Events counts coherent/down: 20
coherent/up: 19
incoherent/down: 21
incoherent/up: 18
Time range -0.200 – 1.000 s
Baseline off
Sampling frequency 250.00 Hz
Time points 301
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
Epoch # event_name coherent/down coherent/up incoherent/down incoherent/up
0 incoherent/up 0.000
1 incoherent/up 0.000
2 incoherent/down 0.000
3 coherent/down 0.000
4 coherent/down 0.000
5 coherent/up 0.000
6 coherent/down 0.000
7 coherent/up 0.000
8 coherent/up 0.000
9 incoherent/down 0.000
10 coherent/up 0.000
11 incoherent/up 0.000
12 coherent/up 0.000
13 coherent/up 0.000
14 incoherent/up 0.000
15 coherent/up 0.000
16 incoherent/down 0.000
17 incoherent/up 0.000
18 coherent/down 0.000
19 coherent/down 0.000
20 incoherent/up 0.000
21 incoherent/down 0.000
22 incoherent/down 0.000
23 incoherent/down 0.000
24 coherent/down 0.000
25 incoherent/down 0.000
26 coherent/down 0.000
27 incoherent/up 0.000
28 coherent/up 0.000
29 incoherent/up 0.000
30 coherent/down 0.000
31 incoherent/down 0.000
32 coherent/up 0.000
33 incoherent/down 0.000
34 coherent/down 0.000
35 incoherent/down 0.000
36 incoherent/up 0.000
37 incoherent/up 0.000
38 incoherent/down 0.000
39 coherent/up 0.000
40 incoherent/down 0.000
41 incoherent/up 0.000
42 incoherent/down 0.000
43 incoherent/down 0.000
44 incoherent/down 0.000
45 coherent/down 0.000
46 incoherent/up 0.000
47 coherent/up 0.000
48 incoherent/up 0.000
49 incoherent/down 0.000
50 coherent/up 0.000
51 coherent/down 0.000
52 coherent/down 0.000
53 incoherent/up 0.000
54 coherent/down 0.000
55 coherent/up 0.000
56 incoherent/down 0.000
57 incoherent/up 0.000
58 incoherent/up 0.000
59 incoherent/down 0.000
60 coherent/down 0.000
61 coherent/down 0.000
62 coherent/down 0.000
63 coherent/up 0.000
64 incoherent/up 0.000
65 incoherent/down 0.000
66 coherent/up 0.000
67 coherent/down 0.000
68 incoherent/down 0.000
69 coherent/up 0.000
70 coherent/up 0.000
71 coherent/down 0.000
72 coherent/up 0.000
73 coherent/down 0.000
74 coherent/down 0.000
75 incoherent/up 0.000
76 incoherent/down 0.000
77 coherent/up 0.000

78 rows × 6 columns

Drop log
PSD
PSD calculated from 78 epochs (93.6 s).
Method picard
Fit parameters ortho=False
extended=True
max_iter=1000
Fit 364 iterations on epochs (23478 samples)
ICA components 57
Available PCA components 306
Channel types mag, grad
ICA components marked for exclusion ICA001
ICA043
ICA047
ICA049
Events
General
MNE object type Epochs
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Total number of events 78
Events counts coherent/down: 20
coherent/up: 19
incoherent/down: 21
incoherent/up: 18
Time range -0.200 – 1.000 s
Baseline off
Sampling frequency 250.00 Hz
Time points 301
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
Epoch # event_name coherent/down coherent/up incoherent/down incoherent/up
0 incoherent/up 0.000
1 incoherent/up 0.000
2 incoherent/down 0.000
3 coherent/down 0.000
4 coherent/down 0.000
5 coherent/up 0.000
6 coherent/down 0.000
7 coherent/up 0.000
8 coherent/up 0.000
9 incoherent/down 0.000
10 coherent/up 0.000
11 incoherent/up 0.000
12 coherent/up 0.000
13 coherent/up 0.000
14 incoherent/up 0.000
15 coherent/up 0.000
16 incoherent/down 0.000
17 incoherent/up 0.000
18 coherent/down 0.000
19 coherent/down 0.000
20 incoherent/up 0.000
21 incoherent/down 0.000
22 incoherent/down 0.000
23 incoherent/down 0.000
24 coherent/down 0.000
25 incoherent/down 0.000
26 coherent/down 0.000
27 incoherent/up 0.000
28 coherent/up 0.000
29 incoherent/up 0.000
30 coherent/down 0.000
31 incoherent/down 0.000
32 coherent/up 0.000
33 incoherent/down 0.000
34 coherent/down 0.000
35 incoherent/down 0.000
36 incoherent/up 0.000
37 incoherent/up 0.000
38 incoherent/down 0.000
39 coherent/up 0.000
40 incoherent/down 0.000
41 incoherent/up 0.000
42 incoherent/down 0.000
43 incoherent/down 0.000
44 incoherent/down 0.000
45 coherent/down 0.000
46 incoherent/up 0.000
47 coherent/up 0.000
48 incoherent/up 0.000
49 incoherent/down 0.000
50 coherent/up 0.000
51 coherent/down 0.000
52 coherent/down 0.000
53 incoherent/up 0.000
54 coherent/down 0.000
55 coherent/up 0.000
56 incoherent/down 0.000
57 incoherent/up 0.000
58 incoherent/up 0.000
59 incoherent/down 0.000
60 coherent/down 0.000
61 coherent/down 0.000
62 coherent/down 0.000
63 coherent/up 0.000
64 incoherent/up 0.000
65 incoherent/down 0.000
66 coherent/up 0.000
67 coherent/down 0.000
68 incoherent/down 0.000
69 coherent/up 0.000
70 coherent/up 0.000
71 coherent/down 0.000
72 coherent/up 0.000
73 coherent/down 0.000
74 coherent/down 0.000
75 incoherent/up 0.000
76 incoherent/down 0.000
77 coherent/up 0.000

78 rows × 6 columns

Drop log
PSD
PSD calculated from 25 epochs (30.0 s).
Method picard
Fit parameters ortho=False
extended=True
max_iter=1000
Fit 364 iterations on epochs (23478 samples)
ICA components 57
Available PCA components 306
Channel types mag, grad
ICA components marked for exclusion ICA001
ICA043
ICA047
ICA049
General
Filename(s) sub-01_task-localizer_proc-filt_raw.fif
MNE object type Raw
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Duration 00:02:60 (HH:MM:SS)
Sampling frequency 250.00 Hz
Time points 45,000
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
PSD
General
Filename(s) sub-01_task-noise_proc-filt_raw.fif
MNE object type Raw
Measurement date 1911-12-11 at 00:00:00 UTC
Participant sub-emptyroom
Experimenter mne_anonymize
Acquisition
Duration 00:01:03 (HH:MM:SS)
Sampling frequency 250.00 Hz
Time points 15,562
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
PSD
{}
General
Filename(s) sub-01_task-localizer_proc-ica_epo.fif
MNE object type EpochsFIF
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Total number of events 78
Events counts coherent/down: 20
coherent/up: 19
incoherent/down: 21
incoherent/up: 18
Time range -0.200 – 1.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 250.00 Hz
Time points 301
Channels
Magnetometers
Gradiometers
EOG
ECG
misc
Stimulus
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
Epoch # event_name coherent/down coherent/up incoherent/down incoherent/up
0 incoherent/up 0.000
1 incoherent/up 0.000
2 incoherent/down 0.000
3 coherent/down 0.000
4 coherent/down 0.000
5 coherent/up 0.000
6 coherent/down 0.000
7 coherent/up 0.000
8 coherent/up 0.000
9 incoherent/down 0.000
10 coherent/up 0.000
11 incoherent/up 0.000
12 coherent/up 0.000
13 coherent/up 0.000
14 incoherent/up 0.000
15 coherent/up 0.000
16 incoherent/down 0.000
17 incoherent/up 0.000
18 coherent/down 0.000
19 coherent/down 0.000
20 incoherent/up 0.000
21 incoherent/down 0.000
22 incoherent/down 0.000
23 incoherent/down 0.000
24 coherent/down 0.000
25 incoherent/down 0.000
26 coherent/down 0.000
27 incoherent/up 0.000
28 coherent/up 0.000
29 incoherent/up 0.000
30 coherent/down 0.000
31 incoherent/down 0.000
32 coherent/up 0.000
33 incoherent/down 0.000
34 coherent/down 0.000
35 incoherent/down 0.000
36 incoherent/up 0.000
37 incoherent/up 0.000
38 incoherent/down 0.000
39 coherent/up 0.000
40 incoherent/down 0.000
41 incoherent/up 0.000
42 incoherent/down 0.000
43 incoherent/down 0.000
44 incoherent/down 0.000
45 coherent/down 0.000
46 incoherent/up 0.000
47 coherent/up 0.000
48 incoherent/up 0.000
49 incoherent/down 0.000
50 coherent/up 0.000
51 coherent/down 0.000
52 coherent/down 0.000
53 incoherent/up 0.000
54 coherent/down 0.000
55 coherent/up 0.000
56 incoherent/down 0.000
57 incoherent/up 0.000
58 incoherent/up 0.000
59 incoherent/down 0.000
60 coherent/down 0.000
61 coherent/down 0.000
62 coherent/down 0.000
63 coherent/up 0.000
64 incoherent/up 0.000
65 incoherent/down 0.000
66 coherent/up 0.000
67 coherent/down 0.000
68 incoherent/down 0.000
69 coherent/up 0.000
70 coherent/up 0.000
71 coherent/down 0.000
72 coherent/up 0.000
73 coherent/down 0.000
74 coherent/down 0.000
75 incoherent/up 0.000
76 incoherent/down 0.000
77 coherent/up 0.000

78 rows × 6 columns

Drop log
PSD
PSD calculated from 25 epochs (30.0 s).
General
MNE object type EvokedArray
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Aggregation average of 39 epochs
Condition 0.51 × coherent/down + 0.49 × coherent/up
Time range -0.200 – 1.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 250.00 Hz
Time points 301
Channels
Magnetometers
Gradiometers
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
Time course (Magnetometers)
Time course (Gradiometers)
Global field power
General
MNE object type EvokedArray
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Aggregation average of 39 epochs
Condition 0.54 × incoherent/down + 0.46 × incoherent/up
Time range -0.200 – 1.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 250.00 Hz
Time points 301
Channels
Magnetometers
Gradiometers
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
Time course (Magnetometers)
Time course (Gradiometers)
Global field power
General
MNE object type EvokedArray
Measurement date 1911-12-07 at 00:00:00 UTC
Participant sub-01
Experimenter mne_anonymize
Acquisition
Aggregation average of 20 epochs
Condition (0.54 × incoherent/down + 0.46 × incoherent/up) - (0.51 × coherent/down + 0.49 × coherent/up)
Time range -0.200 – 1.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 250.00 Hz
Time points 301
Channels
Magnetometers
Gradiometers
Head & sensor digitization 38 points
Filters
Highpass 1.00 Hz
Lowpass 40.00 Hz
Time course (Magnetometers)
Time course (Gradiometers)
Global field power
Full-epochs decoding
Each black dot represents the single cross-validation score. The red cross is the mean of all 5 cross-validation scores. The dashed line is expected chance performance.
Decoding over time: incoherent vs. coherent
Time-by-time decoding: 39 × incoherent vs. 39 × coherent
Time generalization: incoherent vs. coherent
Time generalization (generalization across time, GAT): each classifier is trained on each time point, and tested on all other time points.
CSP decoding: incoherent vs. coherent
Each black dot represents the single cross-validation score. The red cross is the mean of all 5 cross-validation scores. The dashed line is expected chance performance.
Covariance matrix
Singular values
Whitening: coherent
Whitening: incoherent
Whitening: incoherent+coherent
  """hMT+ Localizer."""

bids_root = "~/mne_data/ds003392"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds003392"

subjects = ["01"]

task = "localizer"
# usually a good idea to use True, but we know no bads are detected for this dataset
find_flat_channels_meg = False
find_noisy_channels_meg = False
use_maxwell_filter = True
ch_types = ["meg"]

l_freq = 1.0
h_freq = 40.0
raw_resample_sfreq = 250
crop_runs = (0, 180)

# Artifact correction.
spatial_filter = "ica"
ica_algorithm = "picard-extended_infomax"
ica_max_iterations = 1000
ica_l_freq = 1.0
ica_n_components = 0.99

# Epochs
epochs_tmin = -0.2
epochs_tmax = 1.0
baseline = (None, 0)

# Conditions / events to consider when epoching
conditions = ["coherent", "incoherent"]

# Decoding
decode = True
decoding_time_generalization = True
decoding_time_generalization_decim = 4
contrasts = [("incoherent", "coherent")]
decoding_csp = True
decoding_csp_times = []
decoding_csp_freqs = {
    "alpha": (8, 12),
}

# Noise estimation
noise_cov = "emptyroom"

  Platform             Linux-5.15.0-1057-aws-x86_64-with-glibc2.35
Python               3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0]
Executable           /home/circleci/python_env/bin/python3.10
CPU                  x86_64 (36 cores)
Memory               68.6 GB

Core
├☑ mne               1.8.0.dev79+gcaba81b9f (devel, latest release is 1.7.1)
├☑ numpy             2.0.0 (OpenBLAS 0.3.27 with 2 threads)
├☑ scipy             1.13.1
└☑ matplotlib        3.9.0 (backend=agg)

Numerical (optional)
├☑ sklearn           1.5.0
├☑ numba             0.60.0
├☑ nibabel           5.2.1
├☑ pandas            2.2.2
├☑ h5io              0.2.3
├☑ h5py              3.11.0
└☐ unavailable       nilearn, dipy, openmeeg, cupy

Visualization (optional)
├☑ pyvista           0.43.10 (OpenGL 4.5 (Core Profile) Mesa 23.2.1-1ubuntu3.1~22.04.2 via llvmpipe (LLVM 15.0.7, 256 bits))
├☑ pyvistaqt         0.11.1
├☑ vtk               9.3.0
├☑ qtpy              2.4.1 (PyQt6=6.7.1)
└☐ unavailable       ipympl, pyqtgraph, mne-qt-browser, ipywidgets, trame_client, trame_server, trame_vtk, trame_vuetify

Ecosystem (optional)
├☑ mne-bids          0.16.0.dev3+g0e3cbc66a
├☑ mne-bids-pipeline 1.9.0
├☑ edfio             0.4.2
├☑ pybv              0.7.5
└☐ unavailable       mne-nirs, mne-features, mne-connectivity, mne-icalabel, neo, eeglabio, mffpy