Make an MNE-Report with a Slider

In this example, MEG evoked data are plotted in an HTML slider.

# Authors: Teon Brooks <teon.brooks@gmail.com>
#          Eric Larson <larson.eric.d@gmail.com>
#
# License: BSD (3-clause)

from mne.report import Report
from mne.datasets import sample
from mne import read_evokeds
from matplotlib import pyplot as plt


data_path = sample.data_path()
meg_path = data_path + '/MEG/sample'
subjects_dir = data_path + '/subjects'
evoked_fname = meg_path + '/sample_audvis-ave.fif'

Do standard folder parsing (this can take a couple of minutes):

report = Report(image_format='png', subjects_dir=subjects_dir,
                info_fname=evoked_fname, subject='sample',
                raw_psd=False)  # use False for speed here
report.parse_folder(meg_path, on_error='ignore', mri_decim=10)

Out:

Embedding : jquery.js
Embedding : jquery-ui.min.js
Embedding : bootstrap.min.js
Embedding : jquery-ui.min.css
Embedding : bootstrap.min.css
Iterating over 30 potential files (this may take some time)
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/all-trans.fif
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/ernoise-cov.fif
    306 x 306 full covariance (kind = 1) found.
    Read a total of 3 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
Computing rank from covariance with rank=None
    Using tolerance 9.9e-16 (2.2e-16 eps * 102 dim * 0.044  max singular value)
    Estimated rank (mag): 102
    MAG: rank 102 computed from 102 data channels with 0 projectors
Computing rank from covariance with rank=None
    Using tolerance 8.8e-14 (2.2e-16 eps * 203 dim * 2  max singular value)
    Estimated rank (grad): 203
    GRAD: rank 203 computed from 203 data channels with 0 projectors
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/ernoise_raw-eve.fif
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/ernoise_raw.fif
Opening raw data file /home/circleci/mne_data/MNE-sample-data/MEG/sample/ernoise_raw.fif...
Isotrak not found
    Read a total of 3 projection items:
        PCA-v1 (1 x 102)  idle
        PCA-v2 (1 x 102)  idle
        PCA-v3 (1 x 102)  idle
    Range : 19800 ... 85867 =     32.966 ...   142.965 secs
Ready.
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-ave.fif
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Multiple channel types selected, returning one figure per type.
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-cov.fif
    366 x 366 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
Computing rank from covariance with rank=None
    Using tolerance 2.5e-14 (2.2e-16 eps * 102 dim * 1.1  max singular value)
    Estimated rank (mag): 102
    MAG: rank 102 computed from 102 data channels with 0 projectors
Computing rank from covariance with rank=None
    Using tolerance 1.8e-13 (2.2e-16 eps * 203 dim * 3.9  max singular value)
    Estimated rank (grad): 203
    GRAD: rank 203 computed from 203 data channels with 0 projectors
Computing rank from covariance with rank=None
    Using tolerance 4.7e-14 (2.2e-16 eps * 59 dim * 3.6  max singular value)
    Estimated rank (eeg): 59
    EEG: rank 59 computed from 59 data channels with 0 projectors
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-eeg-oct-6-eeg-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-eeg-oct-6-eeg-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    59 x 59 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 6) found.
    Orientation priors read.
    22494 x 22494 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-eeg-oct-6-fwd.fif
Reading forward solution from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-eeg-oct-6-fwd.fif...
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Desired named matrix (kind = 3523) not available
    Read EEG forward solution (7498 sources, 60 channels, free orientations)
    Source spaces transformed to the forward solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-eeg-oct-6p-fwd.fif
Reading forward solution from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-eeg-oct-6p-fwd.fif...
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-eeg-oct-6-fwd.fif
Reading forward solution from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-eeg-oct-6-fwd.fif...
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Desired named matrix (kind = 3523) not available
    Read MEG forward solution (7498 sources, 306 channels, free orientations)
    Desired named matrix (kind = 3523) not available
    Read EEG forward solution (7498 sources, 60 channels, free orientations)
    MEG and EEG forward solutions combined
    Source spaces transformed to the forward solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-eeg-oct-6-meg-eeg-diagnoise-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-eeg-oct-6-meg-eeg-diagnoise-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    364 x 364 diagonal covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 6) found.
    Orientation priors read.
    22494 x 22494 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-eeg-oct-6-meg-eeg-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-eeg-oct-6-meg-eeg-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    364 x 364 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 6) found.
    Orientation priors read.
    22494 x 22494 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-fwd.fif
Reading forward solution from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-fwd.fif...
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Desired named matrix (kind = 3523) not available
    Read MEG forward solution (7498 sources, 306 channels, free orientations)
    Source spaces transformed to the forward solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-diagnoise-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-diagnoise-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    305 x 305 diagonal covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 6) found.
    Orientation priors read.
    22494 x 22494 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-fixed-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-fixed-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    305 x 305 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    7498 x 7498 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    Did not find the desired covariance matrix (kind = 6)
    7498 x 7498 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    305 x 305 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    22494 x 22494 diagonal covariance (kind = 6) found.
    Orientation priors read.
    22494 x 22494 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-nodepth-fixed-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-oct-6-meg-nodepth-fixed-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    305 x 305 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    7498 x 7498 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    Did not find the desired covariance matrix (kind = 6)
    Did not find the desired covariance matrix (kind = 5)
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    Reading a source space...
    Computing patch statistics...
    Patch information added...
    Distance information added...
    [done]
    2 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-vol-7-fwd.fif
Reading forward solution from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-vol-7-fwd.fif...
    Reading a source space...
    [done]
    1 source spaces read
    Desired named matrix (kind = 3523) not available
    Read MEG forward solution (3757 sources, 306 channels, free orientations)
    Source spaces transformed to the forward solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-vol-7-meg-inv.fif
Reading inverse operator decomposition from /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-meg-vol-7-meg-inv.fif...
    Reading inverse operator info...
    [done]
    Reading inverse operator decomposition...
    [done]
    305 x 305 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Noise covariance matrix read.
    11271 x 11271 diagonal covariance (kind = 2) found.
    Source covariance matrix read.
    Did not find the desired covariance matrix (kind = 6)
    11271 x 11271 diagonal covariance (kind = 5) found.
    Depth priors read.
    Did not find the desired covariance matrix (kind = 3)
    Reading a source space...
    [done]
    1 source spaces read
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 60) active
    Source spaces transformed to the inverse solution coordinate frame
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-no-filter-ave.fif
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | PCA-v1, active : True, n_channels : 102>
Removing projector <Projection | PCA-v2, active : True, n_channels : 102>
Removing projector <Projection | PCA-v3, active : True, n_channels : 102>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Multiple channel types selected, returning one figure per type.
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
combining channels using "gfp"
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis-shrunk-cov.fif
    365 x 365 full covariance (kind = 1) found.
    Read a total of 4 projection items:
        PCA-v1 (1 x 102) active
        PCA-v2 (1 x 102) active
        PCA-v3 (1 x 102) active
        Average EEG reference (1 x 59) active
Computing rank from covariance with rank=None
    Using tolerance 2.8e-14 (2.2e-16 eps * 102 dim * 1.2  max singular value)
    Estimated rank (mag): 102
    MAG: rank 102 computed from 102 data channels with 0 projectors
Computing rank from covariance with rank=None
    Using tolerance 1.9e-13 (2.2e-16 eps * 203 dim * 4.2  max singular value)
    Estimated rank (grad): 203
    GRAD: rank 203 computed from 203 data channels with 0 projectors
Computing rank from covariance with rank=None
    Using tolerance 1.1e-13 (2.2e-16 eps * 59 dim * 8.7  max singular value)
    Estimated rank (eeg): 59
    EEG: rank 59 computed from 59 data channels with 0 projectors
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_ecg-eve.fif
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_ecg-proj.fif
    Read a total of 6 projection items:
        ECG-planar-999--0.200-0.400-PCA-01 (1 x 203)  idle
        ECG-planar-999--0.200-0.400-PCA-02 (1 x 203)  idle
        ECG-axial-999--0.200-0.400-PCA-01 (1 x 102)  idle
        ECG-axial-999--0.200-0.400-PCA-02 (1 x 102)  idle
        ECG-eeg-999--0.200-0.400-PCA-01 (1 x 59)  idle
        ECG-eeg-999--0.200-0.400-PCA-02 (1 x 59)  idle
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_eog-eve.fif
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_eog-proj.fif
    Read a total of 6 projection items:
        EOG-planar-998--0.200-0.200-PCA-01 (1 x 203)  idle
        EOG-planar-998--0.200-0.200-PCA-02 (1 x 203)  idle
        EOG-axial-998--0.200-0.200-PCA-01 (1 x 102)  idle
        EOG-axial-998--0.200-0.200-PCA-02 (1 x 102)  idle
        EOG-eeg-998--0.200-0.200-PCA-01 (1 x 59)  idle
        EOG-eeg-998--0.200-0.200-PCA-02 (1 x 59)  idle
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_filt-0-40_raw-eve.fif
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_filt-0-40_raw.fif
Opening raw data file /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_filt-0-40_raw.fif...
    Read a total of 4 projection items:
        PCA-v1 (1 x 102)  idle
        PCA-v2 (1 x 102)  idle
        PCA-v3 (1 x 102)  idle
        Average EEG reference (1 x 60)  idle
    Range : 6450 ... 48149 =     42.956 ...   320.665 secs
Ready.
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_raw-eve.fif
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_raw-trans.fif
Using outer_skin.surf for head surface.
Getting helmet for system 306m
Rendering : /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_raw.fif
Opening raw data file /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_raw.fif...
    Read a total of 3 projection items:
        PCA-v1 (1 x 102)  idle
        PCA-v2 (1 x 102)  idle
        PCA-v3 (1 x 102)  idle
    Range : 25800 ... 192599 =     42.956 ...   320.670 secs
Ready.
Rendering BEM
Using surface: /home/circleci/mne_data/MNE-sample-data/subjects/sample/bem/inner_skull.surf
Using surface: /home/circleci/mne_data/MNE-sample-data/subjects/sample/bem/outer_skull.surf
Using surface: /home/circleci/mne_data/MNE-sample-data/subjects/sample/bem/outer_skin.surf

Add a custom section with an evoked slider:

# Load the evoked data
evoked = read_evokeds(evoked_fname, condition='Left Auditory',
                      baseline=(None, 0), verbose=False)
evoked.crop(0, .2)
times = evoked.times[::4]
# Create a list of figs for the slider
figs = list()
for t in times:
    figs.append(evoked.plot_topomap(t, vmin=-300, vmax=300, res=100,
                                    show=False))
    plt.close(figs[-1])
report.add_slider_to_section(figs, times, 'Evoked Response',
                             image_format='png')  # can also use 'svg'

# Save the report
report.save('my_report.html', overwrite=True)

Out:

Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Removing projector <Projection | Average EEG reference, active : True, n_channels : 60>
Saving report to location /home/circleci/project/examples/visualization/my_report.html
Rendering : Table of Contents
covariance
 ... ernoise-cov.fif
 ... sample_audvis-cov.fif
 ... sample_audvis-shrunk-cov.fif
events
 ... ernoise_raw-eve.fif
 ... sample_audvis_ecg-eve.fif
 ... sample_audvis_eog-eve.fif
 ... sample_audvis_filt-0-40_raw-eve.fif
 ... sample_audvis_raw-eve.fif
evoked
 ... sample_audvis-ave.fif
 ... sample_audvis-no-filter-ave.fif
forward
 ... sample_audvis-eeg-oct-6-fwd.fif
 ... sample_audvis-meg-eeg-oct-6-fwd.fif
 ... sample_audvis-meg-oct-6-fwd.fif
 ... sample_audvis-meg-vol-7-fwd.fif
inverse
 ... sample_audvis-eeg-oct-6-eeg-inv.fif
 ... sample_audvis-meg-eeg-oct-6-meg-eeg-diagnoise-inv.fif
 ... sample_audvis-meg-eeg-oct-6-meg-eeg-inv.fif
 ... sample_audvis-meg-oct-6-meg-diagnoise-inv.fif
 ... sample_audvis-meg-oct-6-meg-fixed-inv.fif
 ... sample_audvis-meg-oct-6-meg-inv.fif
 ... sample_audvis-meg-oct-6-meg-nodepth-fixed-inv.fif
 ... sample_audvis-meg-vol-7-meg-inv.fif
raw
 ... ernoise_raw.fif
 ... sample_audvis_filt-0-40_raw.fif
 ... sample_audvis_raw.fif
ssp
 ... sample_audvis_ecg-proj.fif
 ... sample_audvis_eog-proj.fif
trans
 ... sample_audvis_raw-trans.fif
bem
 ... bem
Evoked Response
 ... BEM

Total running time of the script: ( 1 minutes 1.946 seconds)

Estimated memory usage: 248 MB

Gallery generated by Sphinx-Gallery