hcp.make_mne_anatomy¶

hcp.make_mne_anatomy(subject, subjects_dir, recordings_path=None, hcp_path='.', outputs=('label', 'mri', 'surf'))¶

Extract relevant anatomy and create MNE friendly directory layout

The function will create the following outputs by default:

$subjects_dir/$subject/bem/inner_skull.surf $subjects_dir/$subject/label/* $subjects_dir/$subject/mri/* $subjects_dir/$subject/surf/* $recordings_path/$subject/$subject-head_mri-trans.fif

These can then be set as $SUBJECTS_DIR and as MEG directory, consistent with MNE examples.

subject : str

The subject name.

subjects_dir : str

The path corresponding to MNE/freesurfer SUBJECTS_DIR (to be created)

hcp_path : str

The path where the HCP files can be found.

outputs : {‘label’, ‘mri’, ‘stats’, ‘surf’, ‘touch’}

The outputs of the freesrufer pipeline shipped by HCP. Defaults to (‘mri’, ‘surf’), the minimum needed to extract MNE-friendly anatomy files and data.