This is the functions reference of MNE-HCP. Functions are
grouped thematically by analysis purpose. Functions that are not
below a module heading are found in the hcp
namespace.
read_raw (subject, data_type[, run_index, ...]) |
Read HCP raw data |
read_epochs (subject, data_type[, onset, ...]) |
Read HCP processed data |
read_evokeds (subject, data_type[, onset, ...]) |
Read HCP processed data |
read_info (subject, data_type[, run_index, ...]) |
Read info from unprocessed data |
read_annot (subject, data_type[, run_index, ...]) |
Read annotations for bad data and ICA. |
read_ica (subject, data_type[, run_index, ...]) |
Read precomputed independent components from subject |
read_trial_info (subject, data_type[, ...]) |
Read information about trials |
make_mne_anatomy (subject, subjects_dir[, ...]) |
Extract relevant anatomy and create MNE friendly directory layout |
compute_forward_stack (subjects_dir, subject, ...) |
Convenience function for conducting standard MNE analyses. |
get_file_paths |
|
get_s3_keys_meg |
|
get_s3_keys_anatomy |
hcp.preprocessing
:
set_eog_ecg_channels (raw) |
Set the HCP ECG and EOG channels |
apply_ica_hcp (raw, ica_mat, exclude) |
Apply the HCP ICA. |
apply_ref_correction (raw[, decim_fit]) |
Regress out MEG ref channels |
map_ch_coords_to_mne (inst) |
Transform sensors to MNE coordinates |
interpolate_missing (inst, subject, ...[, ...]) |
Interpolate all MEG channels that are missing |
hcp.viz
:
plot_coregistration (subject, subjects_dir, ...) |
A diagnostic plot to show the HCP coregistration |
make_hcp_bti_layout (info) |
Get Layout of HCP Magnes3600WH data |