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Somato

Demonstrated features

Feature This example
MEG processing
EEG processing
Maxwell filter
Frequency filter
SSP
ICA
Evoked contrasts
Time-by-time decoding
Time-generalization decoding
CSP decoding
Time-frequency analysis
BEM surface creation
Template MRI

Dataset source

This dataset was acquired from https://openneuro.org/datasets/ds003104

How to download this dataset

Run in your terminal:

Run in your terminal
openneuro-py download \
             --dataset=ds003104 \
             --include=sub-01 \
             --include=derivatives/freesurfer/subjects \
             --exclude=derivatives/freesurfer/subjects/01/mri/aparc+aseg.mgz \
             --exclude=derivatives/freesurfer/subjects/01/mri/aparc.DKTatlas+aseg.mgz \
             --exclude=derivatives/freesurfer/subjects/01/mri/aparc.a2009s+aseg.mgz

Note that we have to explicitly exclude files due to a problem with OpenNeuro's storage.

Configuration

Click to expand
Python
study_name = "MNE-somato-data-anonymized"
bids_root = "~/mne_data/ds003104"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds003104"
subjects_dir = f"{bids_root}/derivatives/freesurfer/subjects"

conditions = ["somato_event1"]
ch_types = ["meg"]