Somato

Demonstrated features

Feature	This example
MEG processing	✅
EEG processing	❌
Maxwell filter	❌
Frequency filter	✅
SSP	❌
ICA	❌
Evoked contrasts	❌
Time-by-time decoding	❌
Time-generalization decoding	❌
CSP decoding	❌
Time-frequency analysis	❌
BEM surface creation	❌
Template MRI	❌

Dataset source

This dataset was acquired from https://openneuro.org/datasets/ds003104

How to download this dataset

Run in your terminal:

Run in your terminal

openneuro-py download \
             --dataset=ds003104 \
             --include=sub-01 \
             --include=derivatives/freesurfer/subjects \
             --exclude=derivatives/freesurfer/subjects/01/mri/aparc+aseg.mgz \
             --exclude=derivatives/freesurfer/subjects/01/mri/aparc.DKTatlas+aseg.mgz \
             --exclude=derivatives/freesurfer/subjects/01/mri/aparc.a2009s+aseg.mgz

Note that we have to explicitly exclude files due to a problem with OpenNeuro's storage.

Configuration

Click to expand

Python

study_name = "MNE-somato-data-anonymized"
bids_root = "~/mne_data/ds003104"
deriv_root = "~/mne_data/derivatives/mne-bids-pipeline/ds003104"
subjects_dir = f"{bids_root}/derivatives/freesurfer/subjects"

conditions = ["somato_event1"]
ch_types = ["meg"]