Version 0.10 (2015-10-26)#

Changelog#

Add support for generalized M-way repeated measures ANOVA for fully balanced designs with mne.stats.f_mway_rm() by Denis Engemann
Add epochs browser to interactively view and manipulate epochs with mne.viz.plot_epochs() by Jaakko Leppakangas
Speed up TF-MxNE inverse solver with block coordinate descent by Daniel Strohmeier and Yousra Bekhti
Speed up zero-phase overlap-add (default) filtering by a factor of up to 2 using linearity by Ross Maddox and Eric Larson
Add support for scaling and adjusting the number of channels/time per view by Jaakko Leppakangas
Add support to toggle the show/hide state of all sections with a single keypress (‘t’) in mne.Report by Mainak Jas
Add support for BEM model creation mne.make_bem_model() by Eric Larson
Add support for BEM solution computation mne.make_bem_solution() by Eric Larson
Add ICA plotters for raw and epoch components by Jaakko Leppakangas
Add new object mne.decoding.TimeDecoding for decoding sensors’ evoked response across time by Jean-Remi King
Add command mne freeview_bem_surfaces to quickly check BEM surfaces with Freeview by Alex Gramfort.
Add support for splitting epochs into multiple files in mne.Epochs.save() by Mainak Jas and Alex Gramfort
Add support for jointly resampling a raw object and event matrix to avoid issues with resampling status channels by Marijn van Vliet
Add new method mne.preprocessing.Xdawn for denoising and decoding of ERP/ERF by Alexandre Barachant
Add support for plotting patterns/filters in mne.decoding.CSP and mne.decoding.LinearModel by Romain Trachel
Add new object mne.decoding.LinearModel for decoding M/EEG data and interpreting coefficients of linear models with patterns attribute by Romain Trachel and Alex Gramfort
Add support to append new channels to an object from a list of other objects by Chris Holdgraf
Add interactive plotting of topomap from time-frequency representation by Jaakko Leppakangas
Add plot_topo method to Evoked object by Jaakko Leppakangas
Add fetcher mne.datasets.brainstorm for datasets used by Brainstorm in their tutorials by Mainak Jas
Add interactive plotting of single trials by right clicking on channel name in epochs browser by Jaakko Leppakangas
New logos and logo generation script by Daniel McCloy
Add ability to plot topomap with a “skirt” (channels outside of the head circle) by Marijn van Vliet
Add multiple options to ICA infomax and extended infomax algorithms (number of subgaussian components, computation of bias, iteration status printing), enabling equivalent computations to those performed by EEGLAB by Jair Montoya Martinez
Add mne.Epochs.apply_baseline() method to Epochs objects by Teon Brooks
Add preload argument to mne.read_epochs() to enable on-demand reads from disk by Eric Larson
Big rewrite of simulation module by Yousra Bekhti, Mark Wronkiewicz, Eric Larson and Alex Gramfort. Allows to simulate raw with artifacts (ECG, EOG) and evoked data, exploiting the forward solution. See mne.simulation.simulate_raw(), mne.simulation.simulate_evoked() and mne.simulation.simulate_sparse_stc()
Add mne.Epochs.load_data() method to mne.Epochs by Teon Brooks
Add support for drawing topomaps by selecting an area in mne.Evoked.plot() by Jaakko Leppakangas
Add support for finding peaks in evoked data in mne.Evoked.plot_topomap() by Jona Sassenhagen and Jaakko Leppakangas
Add source space morphing in morph_source_spaces() and SourceEstimate.to_original_src() by Eric Larson and Denis Engemann
Adapt corrmap function (Viola et al. 2009) to semi-automatically detect similar ICs across data sets by Jona Sassenhagen and Denis Engemann and Eric Larson
Clarify docstring for mne.preprocessing.ICA by jeythekey
New mne flash_bem command to compute BEM surfaces from Flash MRI images by Lorenzo Desantis, Alex Gramfort and Eric Larson. See mne.bem.make_flash_bem().
New gfp parameter in mne.Evoked.plot() method to display Global Field Power (GFP) by Eric Larson.
Add mne.Report.add_slider_to_section methods to mne.Report by Teon Brooks

BUG#

Fix mne.io.add_reference_channels not setting info[nchan] correctly by Federico Raimondo
Fix mne.stats.bonferroni_correction reject mask output to use corrected p-values by Denis Engemann
Fix FFT filter artifacts when using short windows in overlap-add by Eric Larson
Fix picking channels from forward operator could return a channel ordering different from info['chs'] by Chris Bailey
Fix dropping of events after downsampling stim channels by Marijn van Vliet
Fix scaling in mne.viz.utils._setup_vmin_vmax by Jaakko Leppakangas
Fix order of component selection in mne.decoding.CSP by Clemens Brunner

API#

Rename and deprecate mne.viz.plot_topo for mne.viz.plot_evoked_topo by Jaakko Leppakangas
Deprecated mne.decoding.transformer.ConcatenateChannels and replaced by mne.decoding.EpochsVectorizer by Romain Trachel
Deprecated lws and renamed ledoit_wolf for the reg argument in mne.decoding.CSP by Romain Trachel
Redesigned and rewrote mne.Epochs.plot() (no backwards compatibility) during the GSOC 2015 by Jaakko Leppakangas, Mainak Jas, Federico Raimondo and Denis Engemann
Deprecated and renamed mne.viz.plot_image_epochs for mne.plot.plot_epochs_image by Teon Brooks
picks argument has been added to mne.time_frequency.tfr_morlet(), mne.time_frequency.tfr_multitaper() by Teon Brooks
mne.io.Raw.preload_data has been deprecated for mne.io.Raw.load_data() by Teon Brooks
RawBrainVision objects now always have event channel 'STI 014', and recordings with no events will have this channel set to zero by Eric Larson

Authors#

The committer list for this release is the following (preceded by number of commits):

273 Eric Larson
270 Jaakko Leppakangas
194 Alexandre Gramfort
128 Denis A. Engemann
114 Jona Sassenhagen
107 Mark Wronkiewicz
97 Teon Brooks
81 Lorenzo De Santis
55 Yousra Bekhti
54 Jean-Remi King
48 Romain Trachel
45 Mainak Jas
40 Alexandre Barachant
32 Marijn van Vliet
26 Jair Montoya
22 Chris Holdgraf
16 Christopher J. Bailey
7 Christian Brodbeck
5 Natalie Klein
5 Fede Raimondo
5 Alan Leggitt
5 Roan LaPlante
5 Ross Maddox
4 Dan G. Wakeman
3 Daniel McCloy
3 Daniel Strohmeier
1 Jussi Nurminen