mne.channels.read_ch_adjacency

mne.channels.read_ch_adjacency(fname, picks=None)

Read a channel adjacency (“neighbors”) file that ships with MNE.

More information on these neighbor definitions can be found on the related FieldTrip documentation pages.

Parameters:

fnamestr

The path to the file to load, or the name of a channel adjacency matrix that ships with MNE-Python.

Note

You can retrieve the names of all built-in channel adjacencies via mne.channels.get_builtin_ch_adjacencies().

picksstr | array_like | slice | None

Channels to include. Slices and lists of integers will be interpreted as channel indices. In lists, channel type strings (e.g., ['meg', 'eeg']) will pick channels of those types, channel name strings (e.g., ['MEG0111', 'MEG2623'] will pick the given channels. Can also be the string values “all” to pick all channels, or “data” to pick data channels. None (default) will pick all channels. Note that channels in info['bads'] will be included if their names or indices are explicitly provided. Picks must match the template.

Returns:

ch_adjacencyscipy.sparse.csr_matrix, shape (n_channels, n_channels)

The adjacency matrix.

ch_nameslist

The list of channel names present in adjacency matrix.

See also

get_builtin_ch_adjacencies

mne.viz.plot_ch_adjacency

find_ch_adjacency

mne.stats.combine_adjacency

Notes

If the neighbor definition you need is not shipped by MNE-Python, you may use find_ch_adjacency() to compute the adjacency matrix based on your 2D sensor locations.

Note that depending on your use case, you may need to additionally use mne.stats.combine_adjacency() to prepare a final “adjacency” to pass to the eventual function.