Version 0.9 (2015-05-22)#

Changelog#

BUG#

  • Fix energy conservation for STFT with tight frames by Daniel Strohmeier

  • Fix incorrect data matrix when tfr was plotted with parameters tmin, tmax, fmin and fmax by Mainak Jas

  • Fix channel names in topomaps by Alex Gramfort

  • Fix mapping of l_trans_bandwidth (to low frequency) and h_trans_bandwidth (to high frequency) in _BaseRaw.filter by Denis Engemann

  • Fix scaling source spaces when distances have to be recomputed by Christian Brodbeck

  • Fix repeated samples in client to FieldTrip buffer by Mainak Jas and Federico Raimondo

  • Fix highpass and lowpass units read from Brainvision vhdr files by Alex Gramfort

  • Add missing attributes for BrainVision and KIT systems needed for resample by Teon Brooks

  • Fix file extensions of SSP projection files written by mne commands (from _proj.fif to -prof.fif) by Alex Gramfort

  • Generating EEG layouts no longer requires digitization points by Marijn van Vliet

  • Add missing attributes to BTI, KIT, and BrainVision by Eric Larson

  • The API change to the edf, brainvision, and egi break backwards compatibility for when importing eeg data by Teon Brooks

  • Fix bug in mne.viz.plot_topo if ylim was passed for single sensor layouts by Denis Engemann

  • Average reference projections will no longer by automatically added after applying a custom EEG reference by Marijn van Vliet

  • Fix picks argument to filter in n dimensions (affects FilterEstimator), and highpass filter in FilterEstimator by Mainak Jas

  • Fix beamformer code LCMV/DICS for CTF data with reference channels by Denis Engemann and Alex Gramfort

  • Fix scalings for bad EEG channels in mne.viz.plot_topo by Marijn van Vliet

  • Fix EGI reading when no events are present by Federico Raimondo

  • Add functionality to determine plot limits automatically or by data percentiles by Mark Wronkiewicz

  • Fix bug in mne.io.edf where the channel offsets were omitted in the voltage calculations by Teon Brooks

  • Decouple section ordering in command-line from python interface for mne-report by Mainak Jas

  • Fix bug with ICA resetting by Denis Engemann

API#

  • apply_inverse functions have a new boolean parameter prepared which saves computation time by calling prepare_inverse_operator only if it is False

  • find_events and read_events functions have a new parameter mask to set some bits to a don’t care state by Teon Brooks

  • New channels module including layouts, electrode montages, and neighbor definitions of sensors which deprecates mne.layouts by Denis Engemann

  • read_raw_brainvision, read_raw_edf, read_raw_egi all use a standard montage import by Teon Brooks

  • Fix missing calibration factors for mne.io.egi.read_raw_egi by Denis Engemann and Federico Raimondo

  • Allow multiple filename patterns as a list (e.g., *raw.fif and *-eve.fif) to be parsed by mne report in Report.parse_folder() by Mainak Jas

  • read_hsp, read_elp, and write_hsp, write_mrk were removed and made private by Teon Brooks

  • When computing the noise covariance or MNE inverse solutions, the rank is estimated empirically using more sensitive thresholds, which stabilizes results by Denis Engemann and Eric Larson and Alex Gramfort

  • Raw FIFF files can be preloaded after class instantiation using raw.preload_data()

  • Add label parameter to apply_inverse by Teon Brooks

  • Deprecated label_time_courses for in_label method in SourceEstimate by Teon Brooks

  • Deprecated as_data_frame for to_data_frame by Chris Holdgraf

  • Add transform, unit parameters to read_montage by Teon Brooks

  • Deprecated fmin, fmid, fmax in stc.plot and added clim by Mark Wronkiewicz

  • Use scipy.signal.welch instead of matplotlib.psd inside compute_raw_psd and compute_epochs_psd by Yousra Bekhti Eric Larson and Denis Engemann. As a consequence, Raw.plot_raw_psds has been deprecated.

  • Raw instances returned by mne.forward.apply_forward_raw now always have times starting from zero to be consistent with all other Raw instances. To get the former start and stop times, use raw.first_samp / raw.info['sfreq'] and raw.last_samp / raw.info['sfreq'].

  • pick_types_evoked has been deprecated in favor of evoked.pick_types.

  • Deprecated changing the sensor type of channels in rename_channels by Teon Brooks

  • CUDA is no longer initialized at module import, but only when first used.

  • add_figs_to_section and add_images_to_section now have a textbox parameter to add comments to the image by Teon Brooks

  • Deprecated iir_filter_raw for fit_iir_model_raw.

  • Add montage parameter to the create_info function to create the info using montages by Teon Brooks

Authors#

The committer list for this release is the following (preceded by number of commits):

  • 515 Eric Larson

  • 343 Denis A. Engemann

  • 304 Alexandre Gramfort

  • 300 Teon Brooks

  • 142 Mainak Jas

  • 119 Jean-Rémi King

  • 77 Alan Leggitt

  • 75 Marijn van Vliet

  • 63 Chris Holdgraf

  • 57 Yousra Bekhti

  • 49 Mark Wronkiewicz

  • 44 Christian Brodbeck

  • 30 Jona Sassenhagen

  • 29 Hari Bharadwaj

  • 27 Clément Moutard

  • 24 Ingoo Lee

  • 18 Marmaduke Woodman

  • 16 Martin Luessi

  • 10 Jaakko Leppakangas

  • 9 Andrew Dykstra

  • 9 Daniel Strohmeier

  • 7 kjs

  • 6 Dan G. Wakeman

  • 5 Federico Raimondo

  • 3 Basile Pinsard

  • 3 Christoph Dinh

  • 3 Hafeza Anevar

  • 2 Martin Billinger

  • 2 Roan LaPlante

  • 1 Manoj Kumar

  • 1 Matt Tucker

  • 1 Romain Trachel

  • 1 mads jensen

  • 1 sviter

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