Note
Go to the end to download the full example code.
Low-level LSL APIπ
LSL is a library designed for streaming time series data across different platforms and programming languages. The core library is primarily written in C++, and bindings are accessible for Python, C#, Java, MATLAB, and Unity, among others. You can find a comprehensive list here.
MNE-LSL provides a reimplementation of the python binding, known as
pylsl
, within the mne_lsl.lsl
module. It introduces additional functionalities
to simplify the low-level interaction with LSL streams. Moreover, it enhances the
detection of liblsl on your system and can retrieve a compatible version online if
necessary. The differences between pylsl
and mne_lsl.lsl
are detailed
here.
import time
import uuid
import numpy as np
from mne_lsl.lsl import (
StreamInfo,
StreamInlet,
StreamOutlet,
local_clock,
resolve_streams,
)
Creating a streamπ
To create a stream, you must first define its properties. This is achieved by creating
a StreamInfo
object, which specifies the streamβs name, type,
source and properties. Convenience methods are available to set the channel
properties, including set_channel_info()
, which uses a
mne.Info
object as source.
sinfo = StreamInfo(
name="my-stream",
stype="eeg",
n_channels=3,
sfreq=1024,
dtype="float32",
source_id=uuid.uuid4().hex,
)
sinfo.set_channel_names(["Fz", "Cz", "Oz"])
sinfo.set_channel_types("eeg")
sinfo.set_channel_units("microvolts")
Once the StreamInfo
object is created, a
StreamOutlet
can be instantiated to create the stream.
outlet = StreamOutlet(sinfo)
Discover streamsπ
At this point, the StreamOutlet
is available on the network. The
function resolve_streams()
discovers all available streams on the
network. This operation is commonly named the stream resolution.
Note
The stream resolution can be restricted by providing the name
, stype
, and
source_id
arguments.
streams = resolve_streams()
assert len(streams) == 1
streams[0]
< sInfo 'my-stream' >
| Type: eeg
| Sampling: 1024.0 Hz
| Number of channels: 3
| Data type: <class 'numpy.float32'>
| Source: 9940f3bdea6f439e83e27602cb33e9a0
The resolution retrieves only the stream basic properties. The channel properties,
stored in the stream description in an XML element tree, are absent from a
StreamInfo
returned by the resolution function.
assert streams[0].get_channel_names() is None
Connect to a Streamπ
To connect to a stream, a StreamInlet
object must be created
using the resolved StreamInfo
. Once the stream is opened with
open_stream()
, the connection is established and
both the properties and data become available.
inlet = StreamInlet(streams[0])
inlet.open_stream()
sinfo = inlet.get_sinfo() # retrieve stream information with all properties
sinfo.get_channel_names()
['Fz', 'Cz', 'Oz']
sinfo.get_channel_types()
['eeg', 'eeg', 'eeg']
sinfo.get_channel_units()
['microvolts', 'microvolts', 'microvolts']
An mne.Info
can be obtained directly with
get_channel_info()
. If the information contained in the
XML element tree can not be parsed, default values are used. For instance, the channel
names are replaced by the channel numbers similarly to mne.create_info()
.
sinfo.get_channel_info()
Push/Pull operationsπ
For new data to be received, it first need to be pushed on the
StreamOutlet
. 2 methods are available:
push_sample()
to push an individual sample of shape (n_channels,)push_chunk()
to push a chunk of samples of shape (n_samples, n_channels)
outlet.push_sample(np.array([1, 2, 3]))
Once pushed, samples become available at the client end. 2 methods are available to retrieve samples:
pull_sample()
to pull an individual sample of shape (n_channels,)pull_chunk()
to pull a chunk of samples of shape (n_samples, n_channels)
# give a bit of time to the documentation build after the execution of the last cell
time.sleep(0.01)
assert inlet.samples_available == 1
data, ts = inlet.pull_sample()
assert inlet.samples_available == 0
data
array([1., 2., 3.], dtype=float32)
LSL clockπ
The local system timestamp is retrieved with local_clock()
. This
local timestamp can be compared with the LSL timestamp from acquired data.
Timestamp of the acquired data: 239.489840514
Current time: 239.669712563
Delta: 0.17987204899998233 seconds
Free resourcesπ
When you are done with a StreamInlet
or
StreamOutlet
, donβt forget to free the resources they both use.
inlet.close_stream()
del inlet
del outlet
Total running time of the script: (0 minutes 3.212 seconds)
Estimated memory usage: 186 MB