mne_nirs.visualisation.plot_glm_group_topo#
- mne_nirs.visualisation.plot_glm_group_topo(inst, statsmodel_df, value='Coef.', axes=None, threshold=False, *, vlim=(None, None), vmin=None, vmax=None, cmap=None, sensors=True, res=64, sphere=None, colorbar=True, names=False, show_names=None, extrapolate='local', image_interp='cubic')[source]#
Plot topomap of NIRS group level GLM results.
- Parameters:
- instinstance of Info or Raw
Raw data or info structure used to generate the GLM results.
- statsmodel_dfDataFrame
Dataframe created from a statsmodel summary.
- valueString
Which column in the statsmodel_df to use in the topo map.
- axesinstance of Axes | None
The axes to plot to. If None, the current axes will be used.
- thresholdBool
If threshold is true, all values with P>|z| greater than 0.05 will be set to zero.
- vlimtuple of length 2
Colormap limits to use. If a
tupleof floats, specifies the lower and upper bounds of the colormap (in that order); providingNonefor either entry will set the corresponding boundary at the min/max of the data (separately for each topomap).- vminfloat | None
Deprecated, use ‘vlim’ instead.
- vmaxfloat | None
Deprecated, use ‘vlim’ instead.
- cmapmatplotlib colormap | None
Colormap to use. If None, ‘Reds’ is used for all positive data, otherwise defaults to ‘RdBu_r’.
- sensorsbool | str
Add markers for sensor locations to the plot. Accepts matplotlib plot format string (e.g., ‘r+’ for red plusses). If True (default), circles will be used.
- resint
The resolution of the topomap image (n pixels along each side).
- spherenumbers
As specified in mne.
- colorbarbool
Should a colorbar be plotted.
- nameslist of str
The channel names to display.
- show_namesbool
Deprecated, use
namesinstead.- extrapolatestr
Type of extrapolation for image.
- image_interpstr
Type of interpolation for image.
- Returns:
- figfigure
Figure with topographic representation of statsmodel_df value.
