mne.forward.compute_depth_prior¶

mne.forward.
compute_depth_prior
(forward, info, is_fixed_ori=None, exp=0.8, limit=10.0, patch_areas=None, limit_depth_chs=False, combine_xyz='spectral', noise_cov=None, rank=None, verbose=None)[source]¶ Compute depth prior for depth weighting.
 Parameters
 forwardinstance of
Forward
The forward solution.
 infoinstance of
Info
The measurement info.
 is_fixed_oribool 
None
Deprecated, will be removed in 0.19.
 exp
float
Exponent for the depth weighting, must be between 0 and 1.
 limit
float
None
The upper bound on depth weighting. Can be None to be bounded by the largest finite prior.
 patch_areas
ndarray
None
Deprecated, will be removed in 0.19.
 limit_depth_chsbool  ‘whiten’
How to deal with multiple channel types in depth weighting. The default is True, which whitens based on the source sensitivity of the highestSNR channel type. See Notes for details.
Changed in version 0.18: Added the “whiten” option.
 combine_xyz‘spectral’  ‘fro’
When a loose (or free) orientation is used, how the depth weighting for each triplet should be calculated. If ‘spectral’, use the squared spectral norm of Gk. If ‘fro’, use the squared Frobenius norm of Gk.
New in version 0.18.
 noise_covinstance of
Covariance
None
The noise covariance to use to whiten the gain matrix when
limit_depth_chs='whiten'
.New in version 0.18.
 rank
None
dict
 ‘info’  ‘full’ This controls the rank computation that can be read from the measurement info or estimated from the data. See
Notes
ofmne.compute_rank()
for details.The default is None.New in version 0.18.
 verbosebool,
str
,int
, orNone
If not None, override default verbose level (see
mne.verbose()
and Logging documentation for more).
 forwardinstance of
 Returns
 depth_prior
ndarray
, shape (n_vertices,) The depth prior.
 depth_prior
See also
Notes
The defaults used by the minimum norm code and sparse solvers differ. In particular, the values for MNE are:
compute_depth_prior(..., limit=10., limit_depth_chs=True, combine_xyz='spectral')
In sparse solvers and LCMV, the values are:
compute_depth_prior(..., limit=None, limit_depth_chs='whiten', combine_xyz='fro')
The
limit_depth_chs
argument can take the following values:True
(default)Use only grad channels in depth weighting (equivalent to MNE C minimumnorm code). If grad channels aren’t present, only mag channels will be used (if no mag, then eeg). This makes the depth prior dependent only on the sensor geometry (and relationship to the sources).
'whiten'
Compute a whitener and apply it to the gain matirx before computing the depth prior. In this case
noise_cov
must not be None. Whitening the gain matrix makes the depth prior depend on both sensor geometry and the data of interest captured by the noise covariance (e.g., projections, SNR).New in version 0.18.
False
Use all channels. Not recommended since the depth weighting will be biased toward whichever channel type has the largest values in SI units (such as EEG being orders of magnitude larger than MEG).