Show EOG artifact timing

Compute the distribution of timing for EOG artifacts.

# Authors: Eric Larson <larson.eric.d@gmail.com>
#
# License: BSD-3-Clause
# Copyright the MNE-Python contributors.

import matplotlib.pyplot as plt
import numpy as np

import mne
from mne import io
from mne.datasets import sample

print(__doc__)

data_path = sample.data_path()

Set parameters

meg_path = data_path / "MEG" / "sample"
raw_fname = meg_path / "sample_audvis_filt-0-40_raw.fif"

# Setup for reading the raw data
raw = io.read_raw_fif(raw_fname, preload=True)
events = mne.find_events(raw, "STI 014")
eog_event_id = 512
eog_events = mne.preprocessing.find_eog_events(raw, eog_event_id)
raw.add_events(eog_events, "STI 014")

# Read epochs
picks = mne.pick_types(raw.info, meg=False, eeg=False, stim=True, eog=False)
tmin, tmax = -0.2, 0.5
event_ids = {"AudL": 1, "AudR": 2, "VisL": 3, "VisR": 4}
epochs = mne.Epochs(raw, events, event_ids, tmin, tmax, picks=picks)

# Get the stim channel data
data = epochs.get_data(picks="STI 014").squeeze()
data = np.sum((data.astype(int) & eog_event_id) == eog_event_id, axis=0)

Opening raw data file /home/circleci/mne_data/MNE-sample-data/MEG/sample/sample_audvis_filt-0-40_raw.fif...
    Read a total of 4 projection items:
        PCA-v1 (1 x 102)  idle
        PCA-v2 (1 x 102)  idle
        PCA-v3 (1 x 102)  idle
        Average EEG reference (1 x 60)  idle
    Range : 6450 ... 48149 =     42.956 ...   320.665 secs
Ready.
Reading 0 ... 41699  =      0.000 ...   277.709 secs...
319 events found on stim channel STI 014
Event IDs: [ 1  2  3  4  5 32]
Using EOG channel: EOG 061
EOG channel index for this subject is: [375]
Filtering the data to remove DC offset to help distinguish blinks from saccades
Selecting channel EOG 061 for blink detection
Setting up band-pass filter from 1 - 10 Hz

FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 10.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 10.25 Hz)
- Filter length: 1502 samples (10.003 s)

Now detecting blinks and generating corresponding events
Found 46 significant peaks
Number of EOG events detected: 46
Not setting metadata
288 matching events found
Setting baseline interval to [-0.19979521315838786, 0.0] s
Applying baseline correction (mode: mean)
0 projection items activated
Using data from preloaded Raw for 288 events and 106 original time points ...
0 bad epochs dropped

Plot EOG artifact distribution

fig, ax = plt.subplots(layout="constrained")
ax.stem(1e3 * epochs.times, data)
ax.set(xlabel="Times (ms)", ylabel="Blink counts (from %s trials)" % len(epochs))

Estimated memory usage: 129 MB